JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POC5_chr5_75669124_75722437	0/0	a0004	575	22	17	5	0	0	0	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	a0005	575	5	0	0	4	0	1	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	a0006	575	4	0	0	4	0	0	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	a0007	575	2	0	1	0	0	1	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	a0008	575	1	0	0	1	0	0	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	a0009	575	1	0	0	0	0	1	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	a0010	575	1	0	0	1	0	0	copy fasta	POC5	chr5	75669124	75722437
PODNL1_chr19_13926187_13943417	1/1	a0001	574	396	71	78	183	16	46	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0002	574	12	12	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0003	574	5	4	1	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0004	574	5	2	0	3	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0005	574	2	0	2	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0006	574	2	2	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0007	574	2	2	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0008	574	2	1	0	0	0	1	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0009	574	1	0	0	1	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0010	574	1	1	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0011	574	1	1	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0012	574	1	0	1	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0013	574	1	0	0	0	0	1	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	a0014	574	1	0	0	1	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODN_chr1_53057213_53090494	1/1	a0001	613	229	63	30	113	3	18	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	a0002	613	130	28	38	33	7	24	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	a0003	613	34	0	0	34	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	a0004	613	2	0	0	2	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	a0005	613	2	2	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	a0006	613	1	0	1	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	a0007	613	1	0	1	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	a0008	613	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	a0009	613	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	a0010	613	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODXL2_chr3_127624185_127677802	1/1	a0001	605	387	85	74	165	17	44	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	a0002	603	4	1	1	2	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	a0003	605	3	0	0	3	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	a0004	605	2	2	0	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	a0005	605	2	1	1	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	a0006	273	1	0	0	1	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	a0007	605	1	1	0	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	a0008	605	1	0	0	1	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	a0009	609	1	0	0	0	1	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL_chr7_131495271_131561628	0/1	a0001	558	74	2	18	46	4	3	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0002	560	73	19	15	26	2	11	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0003	560	58	1	14	33	2	8	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0004	556	52	3	2	37	5	5	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0005	556	48	23	8	10	0	7	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	1/0	a0006	558	41	13	13	7	3	4	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0007	560	20	0	2	15	0	3	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0008	558	18	1	0	13	1	3	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0009	554	14	13	1	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0010	556	12	0	0	7	0	5	copy fasta	PODXL	chr7	131495271	131561628