JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PODXL_chr7_131495271_131561628	0/0	a0011	556	4	4	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0012	556	3	2	1	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0013	558	3	0	1	0	1	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0014	558	2	0	0	2	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0015	556	2	2	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0016	556	2	1	1	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0017	556	2	2	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0018	556	2	0	0	2	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0019	560	1	0	0	1	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0020	560	1	0	0	1	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0021	560	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0022	560	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0023	560	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0024	558	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0025	556	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0026	554	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0027	554	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	a0028	554	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
POF1B_chrX_85272396_85384665	0/1	a0001	589	197	53	25	88	6	24	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	1/0	a0002	589	13	5	5	1	1	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	a0003	589	7	6	1	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	a0004	589	3	3	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	a0005	589	2	2	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	a0006	589	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	a0007	589	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	a0008	589	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	a0009	263	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	a0010	589	1	1	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POFUT1_chr20_32202880_32243658	1/1	a0001	388	314	88	59	129	8	28	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	a0002	388	4	0	0	2	0	2	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	a0003	388	2	0	1	0	1	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	a0004	388	1	0	0	0	1	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	a0005	388	1	0	0	1	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT2_chr21_45258935_45292895	1/1	a0001	429	412	82	75	195	16	42	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	a0002	429	12	12	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	a0003	429	4	4	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	a0004	429	1	0	0	0	0	1	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	a0005	429	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	a0006	429	1	0	1	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	a0007	429	1	0	0	0	0	1	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	a0008	429	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	a0009	429	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	a0010	429	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	a0011	429	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POGK_chr1_166834475_166861359	1/1	a0001	609	404	93	74	173	16	46	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	a0002	609	2	2	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	a0003	609	1	0	0	1	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	a0004	609	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGLUT1_chr3_119463963_119499708	1/1	a0001	392	412	90	73	184	14	49	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	a0002	392	3	0	0	3	0	0	copy fasta	POGLUT1	chr3	119463963	119499708