JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POGLUT1_chr3_119463963_119499708	0/0	a0003	392	2	0	2	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	a0004	392	2	0	0	2	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	a0005	392	1	0	0	0	0	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	a0006	131	1	0	0	1	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	a0007	392	1	0	1	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT2_chr13_102779281_102803976	1/1	a0001	502	222	21	60	92	10	37	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	a0002	502	207	62	22	110	4	9	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	a0003	502	4	4	0	0	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	a0004	502	1	1	0	0	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	a0005	502	1	0	0	1	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	a0006	502	1	0	0	1	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT3_chr11_108467116_108503384	1/1	a0001	507	336	85	59	141	12	37	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	a0002	507	2	0	1	0	1	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	a0003	507	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	a0004	507	1	0	0	1	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	a0005	507	1	0	0	0	0	1	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	a0006	507	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	a0007	507	1	0	0	0	1	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	a0008	507	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGZ_chr1_151397724_151464494	1/1	a0001	1410	307	74	55	144	9	23	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	a0002	1410	6	6	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	a0003	1410	1	1	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	a0004	1410	1	0	0	0	0	1	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	a0005	1410	1	1	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	a0006	1410	1	0	0	1	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	a0007	1410	1	0	1	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	a0008	1410	1	0	0	0	1	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	a0009	1410	1	0	0	1	0	0	copy fasta	POGZ	chr1	151397724	151464494
POLA1_chrX_24688918_25001986	1/1	a0001	1468	192	64	30	66	9	21	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	a0002	1468	1	0	0	1	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	a0003	1468	1	0	0	1	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	a0004	1468	1	0	1	0	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	a0005	1468	1	0	0	0	0	1	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	a0006	1469	1	0	0	1	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA2_chr11_65256962_65303685	1/1	a0001	598	215	63	36	83	8	23	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	a0002	598	58	22	13	12	0	11	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	a0003	598	5	4	1	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	a0004	598	5	0	0	5	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	a0005	598	1	1	0	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLB_chr8_42333494_42376808	1/1	a0001	335	311	94	47	121	7	40	copy fasta	POLB	chr8	42333494	42376808
POLB_chr8_42333494_42376808	0/0	a0002	335	2	0	1	0	1	0	copy fasta	POLB	chr8	42333494	42376808
POLB_chr8_42333494_42376808	0/0	a0003	335	1	0	0	1	0	0	copy fasta	POLB	chr8	42333494	42376808
POLD1_chr19_50379347_50423014	1/1	a0001	1107	241	66	68	60	10	35	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	a0002	1107	61	16	4	32	0	9	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	a0003	1107	13	11	2	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	a0004	1107	10	0	1	9	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	a0005	1107	3	3	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	a0006	1107	2	1	1	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	a0007	1107	2	0	0	0	2	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	a0008	1107	1	0	0	0	0	1	copy fasta	POLD1	chr19	50379347	50423014