JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POLD1_chr19_50379347_50423014	0/0	a0009	1107	1	0	0	0	0	1	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	a0010	1107	1	0	0	1	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	a0011	1107	1	1	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD2_chr7_44109680_44128548	0/0	a0001	469	415	92	64	195	18	46	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	a0002	469	2	0	2	0	0	0	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	a0003	469	1	0	0	1	0	0	copy fasta	POLD2	chr7	44109680	44128548
POLD3_chr11_74587582_74648076	1/1	a0001	466	391	84	73	180	14	38	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	a0002	466	5	5	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	a0003	466	2	2	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	a0004	466	1	1	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	a0005	466	1	0	1	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD4_chr11_67345772_67358546	1/1	a0001	107	298	92	37	137	6	24	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	a0002	107	16	0	15	1	0	0	copy fasta	POLD4	chr11	67345772	67358546
POLDIP2_chr17_28341633_28362527	1/1	a0001	368	338	90	67	124	12	43	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	a0002	368	2	0	1	0	0	1	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP3_chr22_42578721_42619883	1/1	a0001	421	323	67	60	143	10	41	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	a0002	421	34	19	8	0	4	3	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	a0003	421	2	0	2	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	a0004	421	1	0	0	1	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLE2_chr14_49638555_49693214	1/1	a0001	527	228	93	50	49	14	20	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	a0002	527	2	1	0	1	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	a0003	527	2	0	0	2	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	a0004	527	1	1	0	0	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	a0005	527	1	1	0	0	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE3_chr9_113402235_113415675	1/1	a0001	147	354	92	74	123	18	45	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	a0002	147	1	0	0	1	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	a0003	147	1	0	0	0	0	1	copy fasta	POLE3	chr9	113402235	113415675
POLE4_chr2_74953643_74975128	1/1	a0001	117	293	59	50	141	10	31	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/0	a0002	117	171	26	25	99	8	13	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/0	a0003	118	12	9	3	0	0	0	copy fasta	POLE4	chr2	74953643	74975128
POLE_chr12_132618762_132692342	1/1	a0001	2286	196	47	42	71	6	28	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0002	2286	30	1	7	18	1	3	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0003	2286	21	5	5	1	4	6	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0004	2286	7	6	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0005	2286	4	4	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0006	2286	4	3	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0007	2286	4	0	4	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0008	2286	3	2	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0009	2286	3	3	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0010	2286	3	3	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0011	2286	2	1	0	1	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0012	2286	2	0	0	2	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0013	2286	2	2	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0014	2286	2	0	0	2	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0015	2286	1	0	0	1	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0016	2286	1	0	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0017	2286	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0018	2286	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0019	2286	1	0	0	1	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0020	2286	1	0	0	1	0	0	copy fasta	POLE	chr12	132618762	132692342