JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASAP2_chr2_9201812_9410678	0/0	a0003	1006	1	0	0	1	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	a0004	1006	1	0	0	0	0	1	copy fasta	ASAP2	chr2	9201812	9410678
ASAP3_chr1_23423563_23489179	1/1	a0001	903	331	84	59	132	14	40	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	a0002	903	9	8	1	0	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	a0003	903	2	0	0	2	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	a0004	903	1	0	0	0	1	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	a0005	903	1	1	0	0	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	a0006	903	1	0	0	0	1	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	a0007	903	1	1	0	0	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASB10_chr7_151170698_151192250	1/1	a0001	467	257	58	58	86	15	38	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0002	467	49	3	4	42	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0003	467	41	11	12	14	3	1	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0004	467	32	0	0	31	0	1	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0005	467	27	16	3	5	0	3	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0006	467	12	0	0	12	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0007	467	4	1	0	0	0	3	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0008	467	4	0	0	4	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0009	467	3	0	0	3	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0010	467	3	3	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0011	467	2	0	0	0	0	2	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0012	467	1	0	0	1	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0013	467	1	0	0	1	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0014	467	1	0	0	1	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0015	467	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0016	467	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0017	467	1	0	1	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0018	467	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	a0019	467	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB11_chrX_15276697_15320640	1/0	a0001	323	292	70	55	125	12	29	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	a0002	323	5	5	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/1	a0003	323	3	0	1	0	1	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	a0004	323	2	2	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	a0005	323	1	0	0	1	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	a0006	323	1	0	0	0	0	1	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	a0007	323	1	1	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	a0008	24	1	0	0	1	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB12_chrX_64219194_64235607	1/1	a0001	318	273	72	51	108	11	29	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	a0002	318	5	0	0	5	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	a0003	318	4	4	0	0	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	a0004	318	2	1	0	1	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	a0005	318	1	0	0	0	0	1	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	a0006	318	1	0	1	0	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	a0007	318	1	1	0	0	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	a0008	318	1	0	0	1	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	a0009	318	1	0	0	1	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB13_chr10_5633867_5671595	1/1	a0001	278	431	86	87	195	17	44	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	a0002	278	5	5	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	a0003	278	3	3	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	a0004	278	2	0	0	2	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	a0005	278	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595