JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POLE_chr12_132618762_132692342	0/0	a0021	2286	1	0	0	0	1	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0022	2286	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	a0023	2286	1	0	0	0	0	1	copy fasta	POLE	chr12	132618762	132692342
POLG2_chr17_64472785_64502054	1/1	a0001	485	201	16	33	116	9	25	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	a0002	485	110	72	17	12	3	6	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	a0003	485	6	0	0	0	0	6	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	a0004	485	4	0	4	0	0	0	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	a0005	485	3	3	0	0	0	0	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	a0006	485	1	1	0	0	0	0	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	a0007	485	1	0	0	0	0	1	copy fasta	POLG2	chr17	64472785	64502054
POLG_chr15_89311320_89339824	1/1	a0001	1239	316	55	55	161	8	35	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0002	1240	33	16	8	1	3	5	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0003	1241	20	12	6	0	1	1	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0004	1239	8	2	5	0	1	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0005	1239	3	3	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0006	1239	3	1	0	0	2	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0007	1239	2	0	2	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0008	1240	2	0	1	0	1	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0009	1235	1	0	1	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0010	1239	1	0	0	0	0	1	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0011	1239	1	0	1	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0012	1239	1	0	0	1	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0013	1239	1	0	0	1	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0014	1239	1	1	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0015	1240	1	1	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0016	1240	1	0	0	0	0	1	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0017	1240	1	1	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0018	1239	1	0	1	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	a0019	1239	1	0	0	0	0	1	copy fasta	POLG	chr15	89311320	89339824
POLH_chr6_43571185_43625523	1/1	a0001	713	191	44	47	67	12	19	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	a0002	713	45	32	3	6	0	4	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	a0003	713	7	0	1	1	2	3	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	a0004	713	7	7	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	a0005	713	3	0	0	3	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	a0006	713	3	0	0	3	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	a0007	355	2	2	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	a0008	713	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	a0009	713	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	a0010	713	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	a0011	713	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLI_chr18_54264517_54303234	0/0	a0001	739	234	80	42	72	11	29	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	1/1	a0002	740	80	3	23	41	3	8	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0003	739	4	0	0	4	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0004	740	3	1	1	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0005	739	3	0	2	0	1	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0006	739	2	0	0	2	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0007	739	2	0	0	0	0	2	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0008	739	2	0	0	0	1	1	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0009	740	1	0	0	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0010	740	1	0	1	0	0	0	copy fasta	POLI	chr18	54264517	54303234