JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POLQ_chr3_121426431_121550988	0/0	a0012	2590	4	0	3	0	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0013	2590	4	3	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0014	2590	3	3	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0015	2590	3	3	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0016	2590	3	0	1	0	1	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0017	2589	3	0	2	0	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0018	2590	3	0	3	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0019	2590	2	0	2	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0020	2590	2	0	0	0	0	2	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0021	2590	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0022	2590	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0023	2590	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0024	2590	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0025	1952	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0026	2590	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0027	2590	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0028	2590	1	0	0	0	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0029	2590	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0030	2590	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0031	2590	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0032	2043	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0033	2590	1	0	0	0	1	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0034	2590	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0035	2590	1	0	0	0	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0036	2590	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0037	2590	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0038	2590	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0039	2590	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0040	2590	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0041	2590	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0042	2590	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLR1A_chr2_86015216_86110886	0/1	a0001	1720	167	15	48	75	6	22	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	1/0	a0002	1720	49	2	4	40	2	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0003	1720	35	0	0	30	1	4	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0004	1720	26	13	3	5	1	4	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0005	1720	20	15	3	0	0	2	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0006	1720	15	15	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0007	1720	6	4	2	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0008	1720	6	6	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0009	1720	5	5	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0010	1720	3	3	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0011	1720	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0012	1720	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0013	1720	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0014	1720	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0015	1720	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0016	1720	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0017	1720	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	a0018	1720	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1B_chr2_112537465_112584818	1/0	a0001	1135	238	64	38	116	6	13	copy fasta	POLR1B	chr2	112537465	112584818