JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POLR1B_chr2_112537465_112584818	0/1	a0002	1135	131	23	27	58	6	16	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	a0003	1135	3	3	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	a0004	1135	3	3	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	a0005	1135	2	0	0	2	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	a0006	1135	2	2	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	a0007	1135	1	0	0	0	0	1	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	a0008	1135	1	0	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	a0009	1135	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	a0010	1135	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	a0011	1135	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1C_chr6_43512089_43526513	1/1	a0001	346	358	97	63	140	16	40	copy fasta	POLR1C	chr6	43512089	43526513
POLR1C_chr6_43512089_43526513	0/0	a0002	346	20	0	0	20	0	0	copy fasta	POLR1C	chr6	43512089	43526513
POLR1C_chr6_43512089_43526513	0/0	a0003	346	1	1	0	0	0	0	copy fasta	POLR1C	chr6	43512089	43526513
POLR1C_chr6_43512089_43526513	0/0	a0004	346	1	0	1	0	0	0	copy fasta	POLR1C	chr6	43512089	43526513
POLR1D_chr13_27616892_27628449	1/1	a0001	133	437	94	67	208	16	50	copy fasta	POLR1D	chr13	27616892	27628449
POLR1D_chr13_27616892_27628449	0/0	a0002	133	1	0	1	0	0	0	copy fasta	POLR1D	chr13	27616892	27628449
POLR1E_chr9_37480948_37508697	1/0	a0001	419	296	53	51	140	9	42	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/1	a0002	419	88	18	18	40	3	8	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	a0003	419	12	11	1	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	a0004	419	3	3	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	a0005	419	3	3	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	a0006	419	3	2	1	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	a0007	419	2	1	1	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	a0008	419	1	1	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1F_chr7_19690461_19714037	1/1	a0001	338	425	86	80	191	16	50	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	a0002	338	5	0	0	5	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1G_chr19_45401644_45415737	1/1	a0001	510	143	27	29	52	10	23	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0002	510	137	25	17	81	2	12	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0003	510	69	19	14	34	0	2	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0004	509	44	12	12	2	5	13	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0005	510	5	4	1	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0006	218	1	0	0	0	1	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0007	510	1	0	1	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0008	510	1	0	0	1	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0009	510	1	1	0	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0010	510	1	0	1	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0011	367	1	0	1	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0012	510	1	0	0	1	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	a0013	510	1	0	0	1	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1H_chr6_30056265_30069907	0/1	a0001	126	441	92	79	212	18	39	copy fasta	POLR1H	chr6	30056265	30069907
POLR1H_chr6_30056265_30069907	0/0	a0002	126	4	2	1	0	0	1	copy fasta	POLR1H	chr6	30056265	30069907
POLR2B_chr4_56973896_57036158	1/1	a0001	1174	377	93	76	156	8	42	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	a0002	1174	4	0	0	4	0	0	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	a0003	1174	1	1	0	0	0	0	copy fasta	POLR2B	chr4	56973896	57036158
POLR2C_chr16_57457679_57477009	1/1	a0001	275	389	89	62	180	16	40	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	a0002	275	1	1	0	0	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2D_chr2_127838553_127863155	1/1	a0001	142	357	98	55	146	14	42	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	a0002	142	1	0	1	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2E_chr19_1081574_1100375	0/1	a0001	210	438	98	87	191	15	46	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	a0002	149	1	0	0	1	0	0	copy fasta	POLR2E	chr19	1081574	1100375