JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POLR2E_chr19_1081574_1100375	0/0	a0003	210	1	0	1	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	1/0	a0004	210	1	0	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	a0005	210	1	0	0	0	1	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2F_chr22_37948699_37974312	1/1	a0001	127	403	91	74	182	14	40	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	a0002	127	1	1	0	0	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2G_chr11_62756580_62771710	1/1	a0001	172	367	88	66	161	12	38	copy fasta	POLR2G	chr11	62756580	62771710
POLR2G_chr11_62756580_62771710	0/0	a0002	172	1	0	0	1	0	0	copy fasta	POLR2G	chr11	62756580	62771710
POLR2H_chr3_184356710_184373591	1/1	a0001	150	432	96	80	190	16	48	copy fasta	POLR2H	chr3	184356710	184373591
POLR2I_chr19_36108709_36119875	1/1	a0001	125	438	94	78	198	18	48	copy fasta	POLR2I	chr19	36108709	36119875
POLR2J2_chr7_102661046_102676663	0/0	a0001	115	24	13	4	6	0	1	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J2_chr7_102661046_102676663	0/0	a0002	115	12	1	3	8	0	0	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J2_chr7_102661046_102676663	0/0	a0003	115	8	8	0	0	0	0	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J2_chr7_102661046_102676663	0/0	a0004	115	5	1	1	2	0	1	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J2_chr7_102661046_102676663	0/0	a0005	72	3	3	0	0	0	0	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J3_chr7_102561966_102577583	0/0	a0001	115	24	4	2	16	0	2	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	a0002	115	18	0	1	17	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	a0003	115	16	0	1	14	0	1	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	a0004	115	5	0	0	4	0	1	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	a0005	115	4	0	0	4	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	a0006	115	1	0	0	1	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J_chr7_102468128_102483922	1/1	a0001	117	410	90	74	180	18	46	copy fasta	POLR2J	chr7	102468128	102483922
POLR2K_chr8_100145636_100159003	1/1	a0001	58	430	96	78	190	18	46	copy fasta	POLR2K	chr8	100145636	100159003
POLR2L_chr11_834721_847529	1/1	a0001	67	435	96	82	191	18	46	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	a0002	67	1	0	0	1	0	0	copy fasta	POLR2L	chr11	834721	847529
POLR2M_chr15_57701714_57722557	1/1	a0001	368	383	82	72	181	10	36	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	a0002	368	10	10	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	a0003	368	5	0	0	5	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	a0004	368	2	2	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	a0005	368	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	a0006	368	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	a0007	368	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	a0008	368	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR3A_chr10_77970149_78034515	1/1	a0001	1390	355	80	61	170	8	34	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	a0002	1390	8	6	0	0	2	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	a0003	1390	5	5	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	a0004	1390	2	1	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	a0005	1390	1	0	1	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	a0006	1390	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	a0007	1390	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	a0008	1390	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3B_chr12_106352748_106515198	1/1	a0001	1133	292	92	61	93	16	28	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	a0002	1133	7	0	7	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	a0003	1133	3	0	0	3	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	a0004	1133	1	1	0	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	a0005	1133	1	1	0	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3C_chr1_145819200_145849402	1/1	a0001	534	358	80	66	158	18	34	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	a0002	534	3	3	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	a0003	534	2	0	2	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	a0004	534	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	a0005	534	1	0	0	1	0	0	copy fasta	POLR3C	chr1	145819200	145849402