JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POLR3C_chr1_145819200_145849402	0/0	a0006	534	1	0	0	1	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	a0007	534	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	a0008	534	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3D_chr8_22240133_22259601	1/1	a0001	398	426	100	71	190	18	45	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	a0002	398	3	0	3	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	a0003	398	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	a0004	398	1	0	0	0	0	1	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	a0005	398	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3E_chr16_22292409_22340096	1/1	a0001	708	337	92	56	144	9	34	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	a0002	708	15	1	3	0	3	8	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	a0003	708	2	0	0	0	2	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	a0004	708	1	0	0	1	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	a0005	708	1	0	0	1	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	a0006	708	1	1	0	0	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	a0007	708	1	0	1	0	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3F_chr20_18462390_18489646	1/1	a0001	316	442	96	80	201	18	45	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	a0002	316	5	0	2	3	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	a0003	316	2	0	0	0	0	2	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	a0004	316	1	1	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	a0005	316	1	0	0	0	0	1	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	a0006	316	1	1	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3GL_chr1_145959690_145983848	1/1	a0001	218	372	90	78	156	8	38	copy fasta	POLR3GL	chr1	145959690	145983848
POLR3G_chr5_90469864_90519557	1/1	a0001	223	365	92	68	151	16	36	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	a0002	223	1	0	0	1	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3H_chr22_41520799_41549470	1/1	a0001	204	383	93	72	164	14	38	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	a0002	204	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3K_chr16_41407_58608	0/0	a0001	108	432	98	80	190	18	46	copy fasta	POLR3K	chr16	41407	58608
POLRMT_chr19_612221_638537	1/1	a0001	1230	147	16	36	77	10	6	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0002	1230	95	21	15	34	5	20	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0003	1230	55	0	8	41	0	6	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0004	1230	44	16	4	15	0	9	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0005	1230	9	6	2	0	1	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0006	1230	8	8	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0007	1230	7	7	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0008	1232	7	7	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0009	1230	5	3	2	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0010	1230	4	4	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0011	1230	3	0	2	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0012	1230	3	3	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0013	760	3	0	0	1	1	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0014	1230	2	0	2	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0015	1230	2	2	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0016	760	2	0	1	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0017	1230	2	2	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0018	760	2	0	0	2	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0019	1230	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0020	1230	1	0	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0021	1230	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0022	1230	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0023	1230	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537