JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POLRMT_chr19_612221_638537	0/0	a0024	1241	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0025	1230	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0026	1230	1	0	0	0	1	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0027	1230	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0028	1230	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0029	760	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0030	1230	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0031	1230	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0032	1230	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0033	1230	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0034	1230	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0035	1230	1	0	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0036	1198	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0037	1230	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0038	1230	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0039	1232	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	a0040	1232	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POM121C_chr7_75411786_75491299	0/1	a0001	987	108	6	34	49	8	10	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0002	987	29	16	6	0	1	6	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	1/0	a0003	987	24	21	0	1	0	1	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0004	987	23	20	3	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0005	987	14	11	0	0	1	2	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0006	987	13	0	6	2	2	3	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0007	987	12	1	5	2	3	1	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0008	987	10	0	0	9	0	1	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0009	987	9	0	1	4	0	4	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0010	987	9	0	0	9	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0011	987	7	6	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0012	987	6	0	4	0	0	2	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0013	987	4	3	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0014	987	4	1	1	0	1	1	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0015	987	3	0	3	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0016	987	3	0	0	3	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0017	987	3	0	0	0	0	3	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0018	987	3	0	0	3	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0019	987	3	3	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0020	987	3	0	1	2	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0021	987	2	0	2	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0022	987	2	2	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0023	987	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0024	987	1	0	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0025	987	1	0	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0026	987	1	0	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0027	987	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0028	987	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0029	987	1	0	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0030	987	1	0	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0031	987	1	0	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0032	987	1	0	0	0	0	1	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0033	987	1	0	0	0	0	1	copy fasta	POM121C	chr7	75411786	75491299