JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POM121C_chr7_75411786_75491299	0/0	a0034	987	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0035	987	1	0	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	a0036	987	1	0	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121L12_chr7_53030633_53041925	0/0	a0001	296	144	18	38	58	8	22	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/1	a0002	296	136	15	14	82	5	19	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	a0003	296	66	22	12	26	3	3	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	1/0	a0004	296	55	16	8	27	0	3	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	a0005	296	10	9	1	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	a0006	296	8	8	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	a0007	296	3	3	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	a0008	296	2	2	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	a0009	296	2	2	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	a0010	296	2	0	2	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	a0011	296	1	0	1	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	a0012	296	1	0	0	1	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	a0013	296	1	1	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	a0014	296	1	0	0	0	0	1	copy fasta	POM121L12	chr7	53030633	53041925
POM121L2_chr6_27303377_27317273	0/0	a0001	1035	156	24	21	89	7	15	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0002	1035	81	1	17	53	3	7	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0003	1035	53	30	3	19	0	1	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0004	1035	33	10	10	3	4	6	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0005	1035	28	0	6	22	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0006	1035	11	0	4	4	1	2	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0007	1035	11	10	0	0	0	1	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/1	a0008	1035	11	2	2	3	0	3	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0009	1035	6	1	1	1	1	2	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	1/0	a0010	1035	6	0	0	2	0	3	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0011	1035	5	4	1	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0012	1035	5	5	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0013	1035	5	0	4	1	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0014	1035	3	3	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0015	1035	2	2	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0016	1035	2	1	1	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0017	1035	2	2	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0018	1035	2	0	0	2	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0019	1035	1	0	0	1	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0020	1035	1	0	1	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0021	1035	1	1	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0022	1035	1	0	0	1	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0023	1035	1	0	1	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	a0024	1035	1	0	0	1	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121_chr7_72920095_72953299	1/0	a0001	1249	119	22	30	35	8	23	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/1	a0002	1249	66	2	9	45	2	7	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0003	1249	27	0	0	27	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0004	1249	25	6	3	13	1	2	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0005	1249	21	7	3	10	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0006	1249	20	0	0	19	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0007	1249	12	0	5	5	0	2	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0008	1249	9	8	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0009	1249	8	4	4	0	0	0	copy fasta	POM121	chr7	72920095	72953299