JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POM121_chr7_72920095_72953299	0/0	a0010	1249	8	0	6	0	2	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0011	1244	7	0	0	4	1	2	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0012	1249	6	1	4	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0013	1247	5	0	5	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0014	1264	4	4	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0015	1249	4	0	0	4	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0016	1244	4	1	0	2	1	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0017	1249	3	3	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0018	1254	3	2	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0019	1249	3	0	0	3	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0020	1249	3	0	3	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0021	1244	3	3	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0022	1254	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0023	1254	2	1	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0024	1254	2	0	0	1	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0025	1249	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0026	1249	2	0	0	2	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0027	1249	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0028	1249	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0029	1249	2	0	0	2	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0030	1249	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0031	1249	2	0	0	2	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0032	1244	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0033	1247	1	0	0	0	1	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0034	1249	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0035	1249	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0036	223	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0037	1249	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0038	1264	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0039	1254	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0040	1254	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0041	1254	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0042	1254	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0043	1249	1	0	0	0	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0044	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0045	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0046	1249	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0047	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0048	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0049	1249	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0050	1249	1	0	0	0	1	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0051	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0052	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0053	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0054	1249	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0055	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0056	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0057	1249	1	0	0	0	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0058	1249	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0059	1249	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299