JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POM121_chr7_72920095_72953299	0/0	a0060	1249	1	0	0	0	1	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0061	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0062	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0063	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0064	1249	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0065	1244	1	0	0	0	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0066	1244	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0067	1244	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0068	1244	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0069	1244	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0070	1244	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0071	1244	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0072	1244	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0073	1249	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	a0074	1244	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POMC_chr2_25155860_25173580	1/1	a0001	267	373	59	65	191	15	41	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	a0002	270	38	27	8	0	0	3	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	a0003	267	2	0	1	0	1	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	a0004	300	2	0	2	0	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	a0005	267	1	0	1	0	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	a0006	267	1	0	0	1	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	a0007	273	1	1	0	0	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	a0008	267	1	1	0	0	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	a0009	267	1	0	1	0	0	0	copy fasta	POMC	chr2	25155860	25173580
POMGNT1_chr1_46183683_46203434	0/1	a0001	660	382	76	61	184	14	46	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	1/0	a0002	660	19	17	1	0	0	0	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	0/0	a0003	660	3	0	3	0	0	0	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	0/0	a0004	660	2	1	1	0	0	0	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT2_chr3_43074234_43111079	1/1	a0001	580	359	83	69	160	9	36	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	a0002	580	5	5	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	a0003	580	4	1	3	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	a0004	580	3	3	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	a0005	580	1	0	0	1	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	a0006	580	1	0	0	0	0	1	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	a0007	580	1	1	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	a0008	580	1	0	0	0	1	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	a0009	580	1	0	0	0	0	1	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	a0010	580	1	1	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	a0011	580	1	0	0	1	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMK_chr8_43088515_43128434	1/1	a0001	350	272	80	50	100	6	34	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	a0002	350	1	0	0	1	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	a0003	350	1	1	0	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	a0004	350	1	0	0	1	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	a0005	350	1	1	0	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMP_chr13_28654130_28683959	1/1	a0001	141	431	98	81	192	14	44	copy fasta	POMP	chr13	28654130	28683959
POMP_chr13_28654130_28683959	0/0	a0002	141	1	0	1	0	0	0	copy fasta	POMP	chr13	28654130	28683959
POMT1_chr9_131497918_131528799	1/1	a0001	725	284	76	63	99	14	30	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	a0002	725	32	2	4	21	3	2	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	a0003	725	9	7	1	0	0	1	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	a0004	725	3	0	0	0	1	2	copy fasta	POMT1	chr9	131497918	131528799