JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASB13_chr10_5633867_5671595	0/0	a0006	278	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	a0007	278	1	0	0	1	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	a0008	278	1	0	1	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	a0009	278	1	0	0	0	1	0	copy fasta	ASB13	chr10	5633867	5671595
ASB14_chr3_57263342_57297685	1/1	a0001	587	317	80	72	103	14	46	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	a0002	587	11	9	2	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	a0003	148	1	0	1	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	a0004	587	1	0	0	0	0	1	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	a0005	587	1	1	0	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	a0006	244	1	1	0	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	a0007	334	1	1	0	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	a0008	587	1	0	0	1	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	a0009	587	1	0	0	0	0	1	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	a0010	587	1	0	1	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB15_chr7_123596821_123644481	0/1	a0001	588	244	62	40	101	9	31	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	1/0	a0002	588	69	15	10	35	3	5	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0003	588	21	1	7	12	0	1	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0004	588	14	3	3	3	1	4	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0005	281	7	0	2	5	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0006	588	6	0	0	6	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0007	588	3	3	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0008	588	3	2	1	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0009	588	2	1	0	0	0	1	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0010	588	2	2	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0011	588	2	0	0	2	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0012	588	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0013	588	1	0	1	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0014	588	1	0	0	0	1	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0015	588	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0016	588	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0017	588	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	a0018	588	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB16_chr17_44165704_44184084	0/0	a0001	453	157	37	21	87	4	8	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/1	a0002	453	127	25	22	49	8	22	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0003	453	29	9	5	14	0	1	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	1/0	a0004	453	18	0	6	7	1	3	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0005	453	10	10	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0006	453	5	5	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0007	453	3	0	3	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0008	305	2	0	0	0	0	2	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0009	453	2	2	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0010	453	1	1	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0011	453	1	1	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0012	453	1	1	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0013	415	1	0	0	1	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0014	453	1	0	0	1	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0015	453	1	0	0	0	1	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0016	453	1	0	0	1	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0017	453	1	0	1	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	a0018	453	1	1	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084