JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POMT1_chr9_131497918_131528799	0/0	a0005	725	1	0	0	0	0	1	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	a0006	725	1	0	0	0	0	1	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	a0007	725	1	1	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	a0008	725	1	1	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	a0009	725	1	1	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	a0010	725	1	0	0	0	0	1	copy fasta	POMT1	chr9	131497918	131528799
POMT2_chr14_77269956_77325883	1/1	a0001	750	382	81	68	175	16	40	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	a0002	750	9	9	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	a0003	750	2	0	0	2	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	a0004	750	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	a0005	750	1	0	0	1	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	a0006	750	1	0	0	0	0	1	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	a0007	750	1	0	0	0	0	1	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	a0008	750	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMZP3_chr7_76604986_76632279	0/1	a0000	0	212	63	47	74	11	16	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	a0001	187	193	17	31	114	7	24	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	a0002	187	15	13	2	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	a0003	187	2	2	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	a0004	187	1	1	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
PON1_chr7_95292676_95329532	0/0	a0001	355	235	61	34	113	7	20	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	1/1	a0002	355	114	17	20	49	5	21	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	a0003	355	42	2	14	15	4	7	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	a0004	355	22	0	0	22	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	a0005	355	15	14	1	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	a0006	355	1	0	0	1	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	a0007	355	1	1	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	a0008	355	1	0	0	1	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	a0009	355	1	1	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	a0010	355	1	0	0	1	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	a0011	355	1	0	1	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON2_chr7_95399862_95440028	1/1	a0001	354	295	60	54	142	12	25	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	a0002	354	97	25	18	39	0	15	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	a0003	354	3	3	0	0	0	0	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	a0004	354	1	0	0	1	0	0	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	a0005	354	1	1	0	0	0	0	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	a0006	354	1	1	0	0	0	0	copy fasta	PON2	chr7	95399862	95440028
PON3_chr7_95354872_95401375	1/1	a0001	354	357	81	60	160	8	46	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	a0002	354	4	0	0	4	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	a0003	354	3	3	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	a0004	354	3	3	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	a0005	354	2	1	1	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	a0006	354	1	1	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	a0007	354	1	0	1	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	a0008	354	1	1	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
POP1_chr8_98112293_98164835	1/0	a0001	1024	371	74	68	171	11	46	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/1	a0002	1024	16	8	4	0	0	3	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0003	1024	7	2	2	0	2	1	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0004	1024	6	0	1	5	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0005	1024	3	1	2	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0006	1024	2	2	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835