JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POP1_chr8_98112293_98164835	0/0	a0007	1024	2	0	0	2	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0008	1024	2	2	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0009	1024	2	2	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0010	1024	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0011	1024	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0012	1024	1	1	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0013	1024	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0014	1024	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0015	1024	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0016	1024	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0017	1024	1	0	1	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0018	1024	1	1	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0019	1024	1	0	0	0	1	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	a0020	1024	1	1	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP4_chr19_29601283_29622237	1/1	a0001	220	459	99	82	213	16	47	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	a0002	220	1	0	0	1	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	a0003	220	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	a0004	220	1	0	0	0	0	1	copy fasta	POP4	chr19	29601283	29622237
POP5_chr12_120573764_120586402	1/1	a0001	163	389	92	74	167	16	38	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	a0002	163	2	0	0	2	0	0	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	a0003	28	1	0	0	1	0	0	copy fasta	POP5	chr12	120573764	120586402
POP7_chr7_100701121_100712486	1/1	a0001	140	381	90	60	166	16	47	copy fasta	POP7	chr7	100701121	100712486
POP7_chr7_100701121_100712486	0/0	a0002	140	1	0	0	0	0	1	copy fasta	POP7	chr7	100701121	100712486
POPDC2_chr3_119637056_119665589	1/1	a0001	368	233	54	31	119	7	20	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	a0002	368	172	27	35	73	7	30	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	a0003	368	1	0	0	1	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	a0004	368	1	0	0	1	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	a0005	368	1	1	0	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	a0006	368	1	0	1	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	a0007	368	1	0	1	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC3_chr6_105152900_105185014	1/1	a0001	291	245	83	37	96	5	22	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	a0002	291	12	7	3	0	1	1	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	a0003	291	1	0	0	0	0	1	copy fasta	POPDC3	chr6	105152900	105185014
PORCN_chrX_48503992_48525808	1/1	a0001	461	292	78	45	128	9	30	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	a0002	64	1	1	0	0	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	a0003	461	1	1	0	0	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	a0004	223	1	0	0	1	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	a0005	461	1	0	0	1	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	a0006	417	1	0	0	1	0	0	copy fasta	PORCN	chrX	48503992	48525808
POR_chr7_75910155_75991855	1/1	a0001	677	189	65	41	52	10	19	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	a0002	677	74	11	16	33	1	13	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	a0003	570	4	2	1	1	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	a0004	570	3	1	0	2	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	a0005	570	3	1	1	1	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	a0006	677	1	0	0	0	0	1	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	a0007	677	1	0	1	0	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	a0008	677	1	0	0	0	1	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	a0009	541	1	0	0	1	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	a0010	570	1	0	0	0	0	1	copy fasta	POR	chr7	75910155	75991855
POSTN_chr13_37557585_37603768	1/1	a0001	836	364	73	53	184	17	35	copy fasta	POSTN	chr13	37557585	37603768