JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POSTN_chr13_37557585_37603768	0/0	a0002	836	39	14	11	11	1	2	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	a0003	836	7	7	0	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	a0004	836	1	1	0	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	a0005	836	1	0	1	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	a0006	836	1	1	0	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	a0007	836	1	0	1	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	a0008	836	1	0	0	1	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	a0009	836	1	0	0	0	0	1	copy fasta	POSTN	chr13	37557585	37603768
POT1_chr7_124817386_124934825	1/1	a0001	634	337	80	57	145	18	35	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	a0002	634	2	0	0	2	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	a0003	634	2	0	0	2	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	a0004	634	2	1	0	0	0	1	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	a0005	634	1	0	0	1	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	a0006	634	1	0	1	0	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	a0007	634	1	1	0	0	0	0	copy fasta	POT1	chr7	124817386	124934825
POTEB2_chr15_20830372_20871314	0/0	a0001	441	1	0	0	1	0	0	copy fasta	POTEB2	chr15	20830372	20871314
POTEB2_chr15_20830372_20871314	0/0	a0002	544	1	0	1	0	0	0	copy fasta	POTEB2	chr15	20830372	20871314
POTEB2_chr15_20830372_20871314	0/0	a0003	544	1	0	0	1	0	0	copy fasta	POTEB2	chr15	20830372	20871314
POTEB2_chr15_20830372_20871314	0/0	a0004	544	1	0	1	0	0	0	copy fasta	POTEB2	chr15	20830372	20871314
POTEB3_chr15_21400401_21445499	0/1	a0001	581	17	4	3	7	0	2	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	a0002	581	11	4	2	4	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	1/0	a0003	581	11	1	3	5	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	a0004	581	7	1	1	5	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	a0005	581	3	0	1	0	0	2	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	a0006	581	1	0	0	0	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	a0007	581	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	a0008	581	1	0	0	0	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	a0009	581	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	a0010	544	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB_chr15_21841329_21882735	0/0	a0001	544	31	7	9	13	1	1	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0002	544	8	8	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0003	544	6	4	0	1	0	1	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0004	544	5	0	2	3	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0005	544	4	1	2	1	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0006	544	2	0	0	2	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0007	544	2	2	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0008	544	1	0	0	1	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0009	544	1	0	1	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0010	544	1	1	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0011	544	1	1	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0012	544	1	0	0	1	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	a0013	544	1	0	0	0	1	0	copy fasta	POTEB	chr15	21841329	21882735
POTEC_chr18_14502339_14548600	0/0	a0001	542	79	0	16	54	1	8	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/1	a0002	542	76	21	18	19	5	12	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0003	542	69	26	11	23	1	8	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	1/0	a0004	542	62	3	12	40	0	6	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0005	542	21	11	4	2	3	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0006	542	20	0	0	19	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0007	542	17	12	3	0	2	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0008	542	10	3	0	7	0	0	copy fasta	POTEC	chr18	14502339	14548600