JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POTEC_chr18_14502339_14548600	0/0	a0009	542	8	7	1	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0010	542	5	0	0	5	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0011	542	4	4	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0012	542	3	0	0	3	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0013	542	2	2	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0014	542	2	0	0	2	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0015	542	1	0	1	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0016	542	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0017	542	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0018	542	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0019	542	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0020	542	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0021	542	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0022	542	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0023	46	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	a0024	542	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTED_chr21_13604777_13650823	0/0	a0001	584	228	61	26	115	6	20	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	1/1	a0002	584	81	10	23	33	2	11	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0003	584	36	0	1	31	1	3	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0004	584	29	0	18	0	2	9	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0005	405	9	9	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0006	584	7	6	1	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0007	584	7	0	0	7	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0008	584	6	1	4	0	0	1	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0009	584	3	0	0	3	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0010	584	3	2	1	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0011	584	2	2	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0012	584	2	0	0	2	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0013	584	1	1	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0014	584	1	0	0	0	1	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	a0015	584	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823
POTEE_chr2_131204536_131270278	0/1	a0001	1075	205	49	37	81	8	29	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0002	1075	8	8	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0003	1075	5	5	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0004	1075	5	5	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0005	1075	5	1	1	0	2	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0006	1075	5	5	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0007	1075	4	0	2	2	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0008	1075	4	4	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0009	1075	3	0	0	3	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0010	1075	3	0	0	3	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0011	1075	2	2	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0012	1075	2	2	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0013	1075	2	0	0	2	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	1/0	a0014	1075	2	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0015	1075	2	0	1	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0016	1075	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0017	1075	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0018	1075	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0019	1075	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278