JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POTEE_chr2_131204536_131270278	0/0	a0020	1075	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0021	1075	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0022	272	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0023	1075	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0024	1075	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0025	1075	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0026	1075	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0027	1075	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0028	1075	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0029	1075	1	0	0	0	1	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0030	1075	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0031	1075	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0032	1075	1	0	0	0	1	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0033	1075	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0034	1075	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0035	1075	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0036	1075	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0037	1075	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0038	1075	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0039	1075	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0040	1075	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0041	1075	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0042	1075	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0043	1075	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0044	1075	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0045	1075	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	a0046	1075	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEF_chr2_130068535_130134222	0/0	a0001	1075	53	11	9	24	2	7	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0002	1075	52	8	14	20	1	9	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0003	1075	17	16	1	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0004	1075	4	3	1	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0005	1075	4	4	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0006	1075	3	3	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0007	1075	2	0	1	0	1	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0008	1075	2	2	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0009	1075	2	2	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0010	1075	2	1	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	1/0	a0011	1075	2	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0012	1075	2	2	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0013	1075	2	2	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0014	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0015	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0016	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0017	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0018	1075	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0019	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0020	1075	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0021	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0022	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0023	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222