JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POTEF_chr2_130068535_130134222	0/0	a0024	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0025	1075	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0026	1075	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0027	1075	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0028	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0029	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0030	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	a0031	1075	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEG_chr14_19397486_19439341	0/0	a0001	508	28	2	10	12	0	4	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0002	508	8	3	3	1	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0003	508	8	4	0	3	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0004	508	7	0	3	3	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0005	508	6	2	1	3	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0006	508	6	1	0	1	1	3	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0007	508	5	5	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0008	508	5	0	2	3	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0009	508	4	0	0	1	0	3	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	1/0	a0010	508	3	0	0	2	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0011	508	2	1	1	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0012	508	2	1	1	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0013	508	2	0	0	2	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0014	508	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0015	508	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0016	508	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0017	283	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0018	508	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0019	508	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0020	508	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0021	508	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0022	508	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0023	508	1	0	1	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0024	508	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0025	508	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0026	508	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0027	508	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0028	508	1	0	0	0	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0029	508	1	0	0	0	1	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0030	195	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0031	508	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0032	508	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0033	508	1	0	0	0	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0034	508	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0035	508	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0036	508	1	0	0	0	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0037	508	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	a0038	508	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEH_chr22_15685026_15726631	1/0	a0001	545	1	0	0	0	0	0	copy fasta	POTEH	chr22	15685026	15726631
POTEH_chr22_15685026_15726631	0/0	a0002	545	1	1	0	0	0	0	copy fasta	POTEH	chr22	15685026	15726631
POTEH_chr22_15685026_15726631	0/0	a0003	582	1	1	0	0	0	0	copy fasta	POTEH	chr22	15685026	15726631
POTEI_chr2_130454455_130514328	0/0	a0001	1075	82	3	36	24	6	13	copy fasta	POTEI	chr2	130454455	130514328