JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POTEI_chr2_130454455_130514328	0/0	a0002	1075	7	2	3	1	0	1	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0003	1075	5	1	2	1	0	1	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0004	1075	4	4	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0005	1075	3	3	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	1/0	a0006	1075	3	2	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0007	1075	2	2	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0008	1075	2	0	0	2	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0009	1075	1	0	0	0	0	1	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0010	1038	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0011	1075	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0012	1075	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0013	1075	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0014	1075	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0015	1075	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0016	1075	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0017	1075	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0018	1075	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0019	1075	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0020	1075	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0021	1075	1	0	1	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0022	1075	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0023	1075	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0024	1075	1	0	1	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	a0025	1075	1	0	1	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEJ_chr2_130606440_130663037	0/1	a0001	1038	44	1	10	22	4	6	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0002	1038	21	0	0	15	0	6	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0003	1038	15	0	5	8	0	2	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0004	1038	8	6	0	0	0	2	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0005	1075	7	1	2	4	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0006	1038	4	4	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0007	1038	4	0	0	3	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0008	1038	2	2	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0009	1038	2	2	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0010	1038	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0011	1038	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0012	67	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0013	1038	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0014	1038	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0015	1038	1	0	0	0	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0016	1038	1	0	1	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0017	1038	1	0	1	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0018	1038	1	0	0	0	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0019	1038	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0020	1038	1	0	1	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0021	1038	1	0	0	0	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0022	1038	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0023	1038	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0024	1038	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0025	1038	1	0	0	0	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0026	915	1	0	1	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037