JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POU2F3_chr11_120235140_120324945	0/1	a0001	436	244	76	42	96	1	28	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	1/0	a0002	436	33	1	20	5	2	4	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	a0003	436	33	2	2	17	1	11	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	a0004	436	4	4	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	a0005	436	2	2	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	a0006	436	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	a0007	436	1	0	0	0	0	1	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	a0008	436	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	a0009	436	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU3F1_chr1_38038829_38051793	1/1	a0001	451	382	95	66	164	15	40	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	a0002	450	5	0	0	2	3	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	a0003	451	1	0	0	1	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	a0004	451	1	0	0	1	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	a0005	451	1	1	0	0	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F2_chr6_98829574_98844458	1/1	a0001	443	387	89	66	174	14	42	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	a0002	159	47	7	8	23	1	8	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	a0003	443	1	0	0	1	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	a0004	443	1	0	0	0	1	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F3_chr2_104849115_104863574	0/0	a0000	0	20	7	1	7	0	5	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	1/1	a0001	500	386	91	67	173	16	37	copy fasta	POU3F3	chr2	104849115	104863574
POU3F4_chrX_83503290_83517127	1/1	a0001	361	299	72	52	136	9	28	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	a0002	100	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU4F1_chr13_78593362_78608552	0/1	a0001	420	427	98	80	194	14	40	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	a0002	414	2	0	0	1	0	1	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	a0003	203	1	0	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	a0004	420	1	0	0	0	0	1	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	1/0	a0005	419	1	0	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F2_chr4_146633893_146647474	0/1	a0001	410	254	30	53	135	10	25	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	1/0	a0002	409	91	25	12	43	3	7	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0003	406	37	15	1	14	3	4	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0004	412	6	2	2	2	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0005	414	5	5	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0006	411	5	0	2	1	0	2	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0007	413	4	0	0	4	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0008	406	3	1	2	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0009	409	3	3	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0010	416	2	2	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0011	414	1	1	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0012	409	1	0	0	1	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0013	405	1	0	1	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	a0014	405	1	0	1	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F3_chr5_146333839_146346728	1/1	a0001	338	352	94	72	132	18	34	copy fasta	POU4F3	chr5	146333839	146346728
POU5F1B_chr8_127410867_127421946	0/1	a0001	359	184	10	32	118	4	19	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	1/0	a0002	359	117	21	21	57	5	12	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	a0003	359	61	51	6	0	2	2	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	a0004	359	35	7	9	10	2	7	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	a0005	359	27	0	7	19	1	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	a0006	359	6	5	1	0	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	a0007	359	2	2	0	0	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	a0008	359	2	0	0	2	0	0	copy fasta	POU5F1B	chr8	127410867	127421946