JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POU5F1B_chr8_127410867_127421946	0/0	a0009	359	2	2	0	0	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	a0010	359	1	0	0	1	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	a0011	359	1	1	0	0	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	a0012	359	1	0	0	1	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	a0013	359	1	1	0	0	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1_chr6_31159337_31175682	0/1	a0001	360	439	93	80	203	17	45	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	a0002	360	3	0	0	1	1	1	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	a0003	360	1	0	0	1	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	a0004	360	1	1	0	0	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	a0005	360	1	0	0	1	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F2_chr5_93728220_93746600	1/1	a0001	328	369	90	54	182	12	29	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	a0002	328	3	0	0	3	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	a0003	328	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	a0004	328	1	0	0	0	0	1	copy fasta	POU5F2	chr5	93728220	93746600
POU6F1_chr12_51181936_51223062	0/1	a0001	611	374	79	71	175	13	35	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	1/0	a0002	611	48	10	11	19	2	5	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	a0003	611	8	0	0	8	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	a0004	611	3	3	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	a0005	611	2	0	0	2	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	a0006	611	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	a0007	611	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	a0008	611	1	0	0	0	1	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	a0009	611	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	a0010	611	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F2_chr7_38972909_39473601	0/0	a0001	720	112	42	28	19	4	19	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/1	a0002	720	48	14	6	22	0	5	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	a0003	720	3	3	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	1/0	a0004	720	2	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	a0005	720	1	0	1	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	a0006	720	1	0	0	1	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	a0007	720	1	0	1	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	a0008	720	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	a0009	720	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
PP2D1_chr3_19980346_20017264	1/1	a0001	630	262	53	58	106	13	30	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	a0002	630	88	16	9	48	1	14	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	a0003	630	22	12	7	0	2	1	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	a0004	630	10	10	0	0	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	a0005	630	8	8	0	0	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	a0006	630	2	0	0	2	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	a0007	630	2	0	2	0	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	a0008	630	1	0	0	0	0	1	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	a0009	630	1	1	0	0	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PPA1_chr10_70197835_70238429	1/1	a0001	289	406	98	79	165	16	46	copy fasta	PPA1	chr10	70197835	70238429
PPA1_chr10_70197835_70238429	0/0	a0002	289	1	0	1	0	0	0	copy fasta	PPA1	chr10	70197835	70238429
PPA1_chr10_70197835_70238429	0/0	a0003	289	1	0	0	1	0	0	copy fasta	PPA1	chr10	70197835	70238429
PPA2_chr4_105364077_105479062	1/0	a0001	334	197	81	38	48	7	22	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/1	a0002	334	161	8	31	103	6	12	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	a0003	334	2	0	1	0	1	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	a0004	334	2	0	0	2	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	a0005	334	2	2	0	0	0	0	copy fasta	PPA2	chr4	105364077	105479062