JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASB17_chr1_75913873_75937404	1/1	a0001	295	258	78	58	82	11	27	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	a0002	295	149	20	20	85	5	19	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	a0003	295	1	0	0	1	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	a0004	295	1	0	1	0	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	a0005	295	1	0	0	1	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	a0006	295	1	0	1	0	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	a0007	295	1	0	0	1	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB18_chr2_236188459_236269406	1/0	a0001	466	126	46	18	37	9	15	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0002	466	83	17	19	34	5	8	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0003	466	14	5	4	0	2	3	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0004	466	8	7	1	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0005	466	4	1	3	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0006	466	3	3	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0007	466	3	3	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0008	466	3	3	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0009	466	1	0	1	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0010	477	1	0	0	1	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/1	a0011	466	1	0	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0012	466	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0013	466	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	a0014	466	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB1_chr2_238421927_238457250	1/1	a0001	335	409	88	66	199	14	40	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	a0002	335	7	0	0	7	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB2_chr14_93929166_93981570	0/1	a0001	635	351	89	54	152	15	40	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	a0002	635	5	3	2	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	a0003	635	5	0	4	1	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	a0004	635	2	0	1	1	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	a0005	635	2	0	0	2	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	a0006	635	2	0	0	2	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	a0007	635	1	0	1	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	a0008	635	1	0	0	0	1	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	a0009	635	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	a0010	635	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	a0011	635	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	a0012	635	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB3_chr2_53664980_53791953	1/0	a0001	518	335	84	56	147	12	35	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	a0002	518	5	5	0	0	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/1	a0003	518	4	1	2	0	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	a0004	518	2	0	0	2	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	a0005	518	1	0	0	0	1	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	a0006	518	1	0	0	1	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	a0007	518	1	0	0	0	0	1	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	a0008	518	1	0	0	0	1	0	copy fasta	ASB3	chr2	53664980	53791953
ASB4_chr7_95480943_95545233	1/1	a0001	426	371	84	76	149	14	46	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	a0002	426	14	13	1	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	a0003	426	1	0	1	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	a0004	426	1	0	0	1	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	a0005	426	1	1	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB5_chr4_176208673_176274222	1/1	a0001	329	404	88	70	188	18	38	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	a0002	329	1	0	0	1	0	0	copy fasta	ASB5	chr4	176208673	176274222