JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPA2_chr4_105364077_105479062	0/0	a0006	335	1	0	0	1	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	a0007	334	1	1	0	0	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPAN_chr19_10101362_10117012	1/1	a0001	473	398	79	82	177	14	44	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	a0002	473	30	21	0	6	0	3	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	a0003	473	9	0	0	9	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	a0004	473	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	a0005	473	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	a0006	473	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	a0007	473	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	a0008	473	1	0	0	0	0	1	copy fasta	PPAN	chr19	10101362	10117012
PPARA_chr22_46145526_46248755	1/1	a0001	468	189	90	35	36	5	21	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	a0002	468	6	0	3	3	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	a0003	468	4	0	2	0	1	1	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	a0004	468	1	0	0	1	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARD_chr6_35337558_35433178	1/1	a0001	441	238	82	46	78	4	26	copy fasta	PPARD	chr6	35337558	35433178
PPARGC1A_chr4_23787021_23895047	1/1	a0001	798	194	74	37	54	6	21	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	a0002	798	90	5	20	52	6	7	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	a0003	798	44	8	2	27	0	7	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	a0004	798	7	7	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	a0005	798	3	2	1	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	a0006	798	1	0	0	1	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	a0007	798	1	0	0	0	0	1	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	a0008	798	1	0	0	0	0	1	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	a0009	798	1	0	0	0	0	1	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1B_chr5_149725310_149860022	1/1	a0001	1023	192	37	36	81	9	27	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0002	1023	41	19	4	15	0	3	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0003	1023	30	0	13	15	1	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0004	1023	24	8	6	7	0	3	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0005	1023	10	8	2	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0006	1023	7	7	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0007	1023	3	3	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0008	1023	3	3	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0009	1023	2	2	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0010	1023	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0011	1023	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0012	1023	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0013	1023	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0014	1023	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0015	1023	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0016	1023	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	a0017	1023	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARG_chr3_12284070_12439344	1/1	a0001	475	292	83	63	112	10	22	copy fasta	PPARG	chr3	12284070	12439344
PPARG_chr3_12284070_12439344	0/0	a0002	475	2	1	1	0	0	0	copy fasta	PPARG	chr3	12284070	12439344
PPAT_chr4_56388362_56440615	1/1	a0001	517	384	88	54	188	14	38	copy fasta	PPAT	chr4	56388362	56440615
PPBP_chr4_73981439_73993190	1/1	a0001	128	367	88	60	167	12	38	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	a0002	128	1	0	0	1	0	0	copy fasta	PPBP	chr4	73981439	73993190
PPCDC_chr15_75018590_75055726	0/1	a0001	204	311	45	59	158	12	36	copy fasta	PPCDC	chr15	75018590	75055726
PPCDC_chr15_75018590_75055726	1/0	a0002	204	86	41	7	29	2	6	copy fasta	PPCDC	chr15	75018590	75055726
PPCDC_chr15_75018590_75055726	0/0	a0003	204	1	0	0	1	0	0	copy fasta	PPCDC	chr15	75018590	75055726
PPCS_chr1_42451543_42466236	1/1	a0001	311	394	87	69	174	16	46	copy fasta	PPCS	chr1	42451543	42466236