JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPCS_chr1_42451543_42466236	0/0	a0002	311	1	1	0	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	a0003	311	1	0	1	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPDPFL_chr8_49067344_49081093	1/1	a0001	84	429	96	78	194	18	41	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	a0002	84	3	0	0	2	0	1	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPF_chr20_63515765_63527206	1/1	a0001	114	394	92	76	158	18	48	copy fasta	PPDPF	chr20	63515765	63527206
PPEF1_chrX_18702645_18832917	1/1	a0001	653	216	57	37	95	6	19	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	a0002	653	4	0	3	0	1	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	a0003	653	1	1	0	0	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	a0004	538	1	0	0	1	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	a0005	653	1	0	0	1	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	a0006	653	1	0	0	0	0	1	copy fasta	PPEF1	chrX	18702645	18832917
PPEF2_chr4_75854867_75907452	0/1	a0001	753	212	48	51	72	16	24	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0002	753	15	13	2	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0003	753	12	3	4	0	0	5	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0004	753	7	7	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0005	753	6	6	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0006	447	4	4	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0007	753	3	1	1	0	0	1	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0008	753	3	2	1	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0009	753	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0010	753	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0011	653	1	0	1	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0012	747	1	0	0	1	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	1/0	a0013	753	1	0	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0014	753	1	0	0	1	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0015	753	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	a0016	753	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPFIA1_chr11_70265690_70389396	1/1	a0001	1202	194	71	36	54	11	20	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	a0002	1202	79	17	15	30	5	12	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	a0003	1202	4	4	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	a0004	1202	1	1	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	a0005	1202	1	0	1	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	a0006	1202	1	0	0	1	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	a0007	1202	1	0	0	1	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	a0008	1202	1	1	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA2_chr12_81252975_81764350	0/0	a0001	1257	163	35	33	71	4	20	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	a0002	1257	4	3	1	0	0	0	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	a0003	1257	1	0	0	1	0	0	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA3_chr19_49114544_49156026	1/0	a0001	1194	196	38	33	99	7	18	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/1	a0002	1194	161	54	36	39	7	24	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	a0003	1194	2	0	0	2	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	a0004	1194	1	0	0	1	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	a0005	1194	1	0	0	1	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	a0006	1194	1	0	1	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA4_chr1_203021491_203083736	0/1	a0001	1207	363	92	68	159	12	31	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	a0002	1207	44	3	10	16	3	12	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	a0003	1207	2	0	0	2	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	a0004	1207	2	0	0	0	0	2	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	a0005	1207	2	0	0	0	1	1	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	a0006	1207	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736