JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPFIA4_chr1_203021491_203083736	0/0	a0007	1207	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	a0008	1207	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	a0009	1207	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	1/0	a0010	1207	1	0	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIBP1_chr12_27519206_27700564	0/1	a0001	1005	280	62	57	128	6	26	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0002	1005	9	0	0	9	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0003	1005	5	5	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0004	1005	5	2	2	0	1	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0005	1005	3	0	0	3	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	1/0	a0006	1005	3	2	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0007	1005	2	2	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0008	1005	1	0	0	0	1	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0009	1005	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0010	1005	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0011	1005	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0012	1005	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0013	1005	1	0	1	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	a0014	513	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP2_chr11_7508999_7658756	0/1	a0001	876	261	59	65	83	14	39	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	a0002	876	33	23	4	4	0	2	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	a0003	875	10	1	1	4	2	2	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	a0004	876	5	4	1	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	1/0	a0005	876	2	1	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	a0006	876	2	2	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	a0007	876	1	0	0	0	0	1	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	a0008	876	1	1	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	a0009	876	1	0	1	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	a0010	876	1	0	0	1	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPFIBP2_chr11_7508999_7658756	0/0	a0011	876	1	1	0	0	0	0	copy fasta	PPFIBP2	chr11	7508999	7658756
PPHLN1_chr12_42321167_42447181	1/1	a0001	367	375	82	69	172	12	38	copy fasta	PPHLN1	chr12	42321167	42447181
PPHLN1_chr12_42321167_42447181	0/0	a0002	367	1	0	1	0	0	0	copy fasta	PPHLN1	chr12	42321167	42447181
PPIAL4A_chr1_120884771_120895530	1/1	a0001	164	280	24	30	192	10	22	copy fasta	PPIAL4A	chr1	120884771	120895530
PPIAL4C_chr1_149578848_149589607	1/1	a0001	164	342	71	65	159	14	31	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	a0002	164	73	2	11	54	1	5	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	a0003	164	19	9	2	4	2	2	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	a0004	164	6	3	1	1	0	1	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	a0005	164	5	0	1	2	1	1	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	a0006	164	2	2	0	0	0	0	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4C_chr1_149578848_149589607	0/0	a0007	164	1	1	0	0	0	0	copy fasta	PPIAL4C	chr1	149578848	149589607
PPIAL4D_chr1_145236415_145247174	0/0	a0001	164	390	88	73	173	18	38	copy fasta	PPIAL4D	chr1	145236415	145247174
PPIAL4D_chr1_145236415_145247174	0/0	a0002	162	3	2	1	0	0	0	copy fasta	PPIAL4D	chr1	145236415	145247174
PPIAL4D_chr1_145236415_145247174	0/0	a0003	164	2	2	0	0	0	0	copy fasta	PPIAL4D	chr1	145236415	145247174
PPIAL4D_chr1_145236415_145247174	0/0	a0004	164	1	0	0	1	0	0	copy fasta	PPIAL4D	chr1	145236415	145247174
PPIAL4E_chr1_144367875_144378634	0/0	a0001	164	121	33	18	51	1	18	copy fasta	PPIAL4E	chr1	144367875	144378634
PPIAL4E_chr1_144367875_144378634	0/0	a0002	164	62	12	18	25	2	5	copy fasta	PPIAL4E	chr1	144367875	144378634
PPIAL4E_chr1_144367875_144378634	0/0	a0003	164	16	1	5	7	2	1	copy fasta	PPIAL4E	chr1	144367875	144378634
PPIAL4E_chr1_144367875_144378634	0/0	a0004	164	1	0	0	1	0	0	copy fasta	PPIAL4E	chr1	144367875	144378634
PPIAL4E_chr1_144367875_144378634	0/0	a0005	164	1	0	0	0	1	0	copy fasta	PPIAL4E	chr1	144367875	144378634
PPIAL4E_chr1_144367875_144378634	0/0	a0006	164	1	0	1	0	0	0	copy fasta	PPIAL4E	chr1	144367875	144378634
PPIAL4F_chr1_144587893_144598652	0/0	a0001	164	133	22	26	65	9	11	copy fasta	PPIAL4F	chr1	144587893	144598652