JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPIAL4F_chr1_144587893_144598652	0/0	a0002	164	68	25	12	25	1	5	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	a0003	164	11	0	4	7	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	a0004	164	2	0	0	0	1	1	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	a0005	164	2	0	0	2	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	a0006	132	1	1	0	0	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	a0007	164	1	0	0	1	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	a0008	164	1	0	0	0	1	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	a0009	164	1	0	0	0	0	1	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4G_chr1_148477548_148488302	1/1	a0001	164	323	88	52	139	14	28	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	a0002	164	107	2	18	76	2	9	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	a0003	164	5	0	0	0	0	5	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	a0004	164	4	3	1	0	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	a0005	164	3	1	2	0	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	a0006	164	3	0	3	0	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	a0007	164	2	2	0	0	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	a0008	164	1	0	0	1	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	a0009	164	1	0	0	0	0	1	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	a0010	164	1	0	0	0	0	1	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4H_chr1_146339006_146349765	1/1	a0001	164	341	56	58	172	14	39	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	a0002	164	44	12	5	19	1	7	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	a0003	164	10	5	0	2	1	2	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	a0004	164	8	8	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	a0005	164	5	0	5	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	a0006	164	2	2	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	a0007	164	1	0	0	1	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	a0008	164	1	1	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	a0009	164	1	0	0	1	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	a0010	164	1	0	0	1	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	a0011	164	1	1	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	a0012	164	1	1	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIA_chr7_44791681_44808117	1/1	a0001	165	430	98	86	190	14	40	copy fasta	PPIA	chr7	44791681	44808117
PPIB_chr15_64150817_64168022	1/1	a0001	216	339	97	58	118	16	48	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	a0002	216	1	1	0	0	0	0	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	a0003	216	1	0	0	1	0	0	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	a0004	216	1	0	0	1	0	0	copy fasta	PPIB	chr15	64150817	64168022
PPIC_chr5_123018250_123041725	1/1	a0001	212	345	85	64	158	10	26	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	a0002	212	23	2	11	2	3	5	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	a0003	212	10	8	0	1	0	1	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	a0004	212	1	0	0	1	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	a0005	212	1	0	0	0	1	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	a0006	212	1	1	0	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	a0007	212	1	0	1	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPID_chr4_158704127_158728396	1/0	a0001	370	225	56	40	103	4	21	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/1	a0002	370	96	37	7	31	3	17	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	a0003	370	16	0	1	13	0	2	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	a0004	152	5	0	0	5	0	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	a0005	370	2	0	0	0	2	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	a0006	370	2	2	0	0	0	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	a0007	370	1	0	0	0	1	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	a0008	370	1	1	0	0	0	0	copy fasta	PPID	chr4	158704127	158728396