JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPIE_chr1_39733882_39761769	1/1	a0001	301	433	95	72	202	16	46	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	a0002	301	1	1	0	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIF_chr10_79342469_79360334	1/1	a0001	207	405	94	74	181	16	38	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	a0002	207	2	0	0	2	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	a0003	207	1	0	0	1	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIG_chr2_169579351_169646406	0/1	a0001	754	161	45	19	78	4	14	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	1/0	a0002	754	160	23	30	85	6	15	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	a0003	754	57	24	13	6	4	10	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	a0004	754	2	2	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	a0005	754	2	0	0	1	0	1	copy fasta	PPIG	chr2	169579351	169646406
PPIH_chr1_42653423_42681758	1/1	a0001	177	372	90	60	162	14	44	copy fasta	PPIH	chr1	42653423	42681758
PPIL1_chr6_36849829_36879803	1/1	a0001	166	409	92	75	188	14	38	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	a0002	166	1	0	1	0	0	0	copy fasta	PPIL1	chr6	36849829	36879803
PPIL2_chr22_21661012_21702907	1/1	a0001	520	375	92	70	151	14	46	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	a0002	520	2	2	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	a0003	520	1	0	0	1	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL3_chr2_200865907_200894077	1/1	a0001	161	281	53	59	123	10	34	copy fasta	PPIL3	chr2	200865907	200894077
PPIL3_chr2_200865907_200894077	0/0	a0002	161	55	39	9	3	4	0	copy fasta	PPIL3	chr2	200865907	200894077
PPIL4_chr6_149499495_149551043	1/1	a0001	492	303	88	52	119	6	36	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	a0002	492	1	1	0	0	0	0	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	a0003	492	1	0	0	1	0	0	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	a0004	492	1	1	0	0	0	0	copy fasta	PPIL4	chr6	149499495	149551043
PPIL6_chr6_109385215_109445628	1/1	a0001	311	369	87	73	162	14	31	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	a0002	311	26	1	1	24	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	a0003	311	1	0	0	0	0	1	copy fasta	PPIL6	chr6	109385215	109445628
PPIP5K1_chr15_43528475_43595208	1/1	a0001	1490	107	10	28	34	10	23	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	a0002	1490	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	a0003	1490	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	a0004	1490	1	0	0	1	0	0	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	a0005	1490	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	a0006	1490	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	a0007	1490	1	0	0	1	0	0	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	a0008	1490	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K2_chr5_103115301_103217799	1/1	a0001	1243	266	73	44	121	4	22	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	a0002	1243	8	0	3	0	3	2	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	a0003	1243	3	1	1	0	1	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	a0004	1243	3	3	0	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	a0005	1243	1	1	0	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	a0006	1243	1	1	0	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	a0007	1243	1	1	0	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	a0008	1243	1	0	0	1	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPL_chr16_4877507_4942148	0/0	a0001	1756	118	6	24	65	6	17	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/1	a0002	1756	96	46	13	24	4	8	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0003	1756	42	0	13	20	0	9	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	1/0	a0004	1756	17	16	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0005	1756	12	0	7	3	1	1	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0006	1756	8	8	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0007	1756	7	1	2	2	2	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0008	1756	6	0	0	6	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0009	1756	5	0	0	5	0	0	copy fasta	PPL	chr16	4877507	4942148