JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPL_chr16_4877507_4942148	0/0	a0010	1756	3	0	0	3	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0011	1756	3	0	0	3	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0012	1756	3	0	0	3	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0013	1757	3	3	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0014	1756	3	0	1	2	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0015	1756	3	0	0	3	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0016	1756	2	2	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0017	1756	2	0	0	2	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0018	1756	2	2	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0019	1756	2	2	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0020	1756	2	2	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0021	1756	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0022	1756	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0023	1756	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0024	1756	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0025	1756	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0026	1756	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0027	1756	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0028	1756	1	0	0	0	0	1	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0029	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0030	1756	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0031	1756	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0032	1756	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0033	1756	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0034	1756	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0035	1756	1	0	0	0	1	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0036	1756	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0037	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0038	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0039	1756	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0040	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0041	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0042	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0043	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0044	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0045	1756	1	0	0	0	0	1	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0046	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0047	1756	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0048	1756	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0049	1756	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0050	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0051	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0052	1756	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	a0053	1756	1	0	0	0	0	1	copy fasta	PPL	chr16	4877507	4942148
PPM1A_chr14_60244221_60304087	1/1	a0001	382	268	84	56	82	12	32	copy fasta	PPM1A	chr14	60244221	60304087
PPM1B_chr2_44163875_44236472	1/1	a0001	479	352	89	64	154	12	31	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	a0002	479	4	4	0	0	0	0	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	a0003	479	1	0	0	0	0	1	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	a0004	479	1	1	0	0	0	0	copy fasta	PPM1B	chr2	44163875	44236472
PPM1D_chr17_60595193_60671280	1/1	a0001	605	208	87	24	81	8	6	copy fasta	PPM1D	chr17	60595193	60671280