JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPM1D_chr17_60595193_60671280	0/0	a0002	605	3	0	0	3	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	a0003	605	2	0	0	2	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	a0004	605	1	1	0	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1E_chr17_58750854_58990179	0/0	a0001	757	187	56	33	69	10	19	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	1/1	a0002	755	114	21	28	53	1	9	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	a0003	759	4	3	0	1	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	a0004	757	3	1	2	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	a0005	757	1	0	0	1	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	a0006	755	1	0	1	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	a0007	755	1	0	0	0	1	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	a0008	757	1	1	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1F_chr22_21914425_21957848	1/0	a0001	454	251	86	54	72	11	27	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	a0002	454	53	0	1	49	0	3	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/1	a0003	454	29	3	9	11	1	4	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	a0004	454	2	0	0	2	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	a0005	436	2	0	0	2	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	a0006	454	2	2	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	a0007	454	1	0	0	1	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	a0008	454	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	a0009	454	1	0	0	1	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1G_chr2_27376199_27414591	1/1	a0001	546	258	84	58	73	8	33	copy fasta	PPM1G	chr2	27376199	27414591
PPM1G_chr2_27376199_27414591	0/0	a0002	546	1	0	0	1	0	0	copy fasta	PPM1G	chr2	27376199	27414591
PPM1G_chr2_27376199_27414591	0/0	a0003	546	1	0	0	0	0	1	copy fasta	PPM1G	chr2	27376199	27414591
PPM1H_chr12_62638994_62940150	1/1	a0001	514	249	79	41	97	6	24	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	a0002	514	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	a0003	514	1	0	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	a0004	514	1	0	1	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1J_chr1_112704998_112720332	0/1	a0001	505	378	73	71	179	14	40	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	1/0	a0002	505	15	14	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0003	505	10	1	4	0	2	3	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0004	505	4	4	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0005	505	4	0	3	0	0	1	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0006	505	2	0	0	0	0	2	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0007	505	2	0	0	2	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0008	505	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0009	414	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0010	505	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0011	505	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0012	505	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0013	505	1	0	0	1	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	a0014	505	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1K_chr4_88252620_88289561	1/1	a0001	372	344	80	68	142	16	36	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	a0002	372	3	3	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	a0003	372	2	2	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	a0004	372	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	a0005	372	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	a0006	372	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1L_chr3_160751231_161083902	0/0	a0001	360	205	66	47	70	4	18	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	a0002	360	1	0	1	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1M_chr3_52240759_52255599	1/1	a0001	459	377	87	77	155	16	40	copy fasta	PPM1M	chr3	52240759	52255599