JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPM1M_chr3_52240759_52255599	0/0	a0002	459	1	0	0	1	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	a0003	459	1	1	0	0	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	a0004	459	1	0	1	0	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1N_chr19_45493443_45507513	1/1	a0001	430	423	91	78	193	13	46	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	a0002	430	3	0	3	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	a0003	21	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	a0004	430	1	0	1	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	a0005	430	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	a0006	430	1	0	0	0	0	1	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	a0007	430	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	a0008	430	1	1	0	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	a0009	430	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	a0010	430	1	0	0	0	1	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	a0011	430	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	a0012	430	1	0	0	0	0	1	copy fasta	PPM1N	chr19	45493443	45507513
PPME1_chr11_74166289_74259703	1/1	a0001	386	366	96	52	165	14	37	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	a0002	386	2	0	0	2	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	a0003	386	1	0	0	0	0	1	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	a0004	386	1	0	0	1	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPOX_chr1_161161426_161176220	1/1	a0001	477	338	72	65	143	16	40	copy fasta	PPOX	chr1	161161426	161176220
PPOX_chr1_161161426_161176220	0/0	a0002	477	25	0	1	22	2	0	copy fasta	PPOX	chr1	161161426	161176220
PPOX_chr1_161161426_161176220	0/0	a0003	477	1	0	0	1	0	0	copy fasta	PPOX	chr1	161161426	161176220
PPP1CA_chr11_67393183_67406858	1/1	a0001	330	378	96	72	162	12	34	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CB_chr2_28746830_28807940	1/1	a0001	327	366	86	74	152	18	34	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CC_chr12_110714680_110747891	1/1	a0001	323	337	90	69	114	16	46	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1CC_chr12_110714680_110747891	0/0	a0002	323	1	0	1	0	0	0	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1R10_chr6_30595413_30622243	0/1	a0001	940	447	87	84	215	12	48	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	a0002	940	2	0	0	2	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	a0003	940	2	2	0	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	a0004	940	2	0	2	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	a0005	940	2	0	0	0	2	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	a0006	940	1	1	0	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	a0007	940	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	a0008	908	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	a0009	940	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R11_chr6_30062198_30075333	0/1	a0001	126	441	87	80	211	18	44	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	a0002	126	1	0	0	1	0	0	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	a0003	126	1	1	0	0	0	0	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R12A_chr12_79768568_79940097	1/1	a0001	1030	307	73	40	149	8	35	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	a0002	1030	1	1	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	a0003	1030	1	0	0	1	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	a0004	1030	1	1	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	a0005	1030	1	0	0	0	0	1	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	a0006	1030	1	1	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12B_chr1_202343699_202597702	1/1	a0001	982	246	70	51	94	12	17	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	a0002	982	2	0	2	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	a0003	977	1	0	1	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	a0004	982	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	a0005	982	1	0	0	0	0	1	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	a0006	982	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702