JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPP1R12B_chr1_202343699_202597702	0/0	a0007	982	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	a0008	982	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12C_chr19_55085918_55122637	1/1	a0001	782	378	86	74	161	12	43	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	a0002	782	3	3	0	0	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	a0003	782	3	3	0	0	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	a0004	782	1	0	0	1	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	a0005	782	1	0	0	0	0	1	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	a0006	782	1	1	0	0	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	a0007	782	1	0	0	1	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	a0008	782	1	1	0	0	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	a0009	782	1	0	0	1	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R13B_chr14_103728195_103852575	1/1	a0001	1090	314	81	66	116	13	36	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	a0002	1090	7	7	0	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	a0003	1090	4	0	0	4	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	a0004	1090	2	1	0	0	1	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	a0005	1090	1	1	0	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	a0006	1090	1	1	0	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	a0007	1090	1	0	0	1	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	a0008	1090	1	1	0	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	a0009	1090	1	0	0	1	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13L_chr19_45374638_45410069	1/1	a0001	828	370	94	70	148	14	42	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	a0002	828	2	0	2	0	0	0	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	a0003	828	1	0	1	0	0	0	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	a0004	828	1	0	1	0	0	0	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	a0005	828	1	0	0	0	0	1	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	a0006	828	1	0	0	0	0	1	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R14A_chr19_38246237_38261374	1/1	a0001	147	421	88	79	190	12	50	copy fasta	PPP1R14A	chr19	38246237	38261374
PPP1R14A_chr19_38246237_38261374	0/0	a0002	147	2	0	0	2	0	0	copy fasta	PPP1R14A	chr19	38246237	38261374
PPP1R14A_chr19_38246237_38261374	0/0	a0003	147	1	0	1	0	0	0	copy fasta	PPP1R14A	chr19	38246237	38261374
PPP1R14A_chr19_38246237_38261374	0/0	a0004	136	1	0	0	1	0	0	copy fasta	PPP1R14A	chr19	38246237	38261374
PPP1R14A_chr19_38246237_38261374	0/0	a0005	147	1	0	0	1	0	0	copy fasta	PPP1R14A	chr19	38246237	38261374
PPP1R14B_chr11_64239479_64251943	0/1	a0001	147	365	96	80	138	12	38	copy fasta	PPP1R14B	chr11	64239479	64251943
PPP1R14C_chr6_150138044_150255392	0/0	a0001	165	193	61	26	85	3	18	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	1/1	a0002	165	117	21	42	11	15	26	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	a0003	165	1	1	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	a0004	165	1	1	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14D_chr15_40810451_40833708	1/1	a0001	145	387	89	66	176	16	38	copy fasta	PPP1R14D	chr15	40810451	40833708
PPP1R14D_chr15_40810451_40833708	0/0	a0002	145	1	1	0	0	0	0	copy fasta	PPP1R14D	chr15	40810451	40833708
PPP1R15A_chr19_48867421_48881058	1/0	a0001	674	165	10	41	88	3	22	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0002	674	74	34	12	20	5	3	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0003	674	35	1	1	33	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0004	674	19	0	2	12	3	2	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0005	674	15	5	1	6	0	3	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0006	674	15	1	9	0	3	2	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0007	674	9	7	0	0	0	2	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0008	674	8	0	0	8	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0009	674	6	2	1	2	0	1	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0010	674	6	6	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0011	674	5	5	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/1	a0012	674	4	0	0	0	0	3	copy fasta	PPP1R15A	chr19	48867421	48881058