JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPP1R15A_chr19_48867421_48881058	0/0	a0013	674	4	4	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0014	674	4	0	0	4	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0015	674	2	1	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0016	674	2	0	0	1	0	1	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0017	674	2	0	2	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0018	674	2	0	0	2	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0019	674	2	2	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0020	674	2	0	0	1	0	1	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0021	674	2	0	0	0	0	2	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0022	674	2	1	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0023	674	2	2	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0024	674	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0025	674	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0026	674	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0027	674	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0028	674	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0029	674	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0030	674	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0031	674	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0032	674	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0033	674	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0034	674	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0035	674	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0036	674	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0037	674	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0038	674	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0039	674	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0040	674	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0041	674	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	a0042	674	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15B_chr1_204398381_204416817	1/1	a0001	713	354	71	59	162	18	42	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	a0002	713	11	7	3	0	0	1	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	a0003	713	7	7	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	a0004	713	6	0	0	6	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	a0005	713	5	0	0	5	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	a0006	713	3	3	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	a0007	713	2	0	1	0	0	1	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	a0008	713	2	2	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	a0009	713	1	1	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	a0010	713	1	1	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	a0011	713	1	0	0	1	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	a0012	713	1	0	1	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R16A_chr8_144472982_144507121	1/1	a0001	528	345	88	67	135	14	39	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	a0002	528	5	0	0	5	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	a0003	528	3	0	0	3	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	a0004	528	1	0	0	1	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	a0005	528	1	0	1	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	a0006	528	1	0	0	0	0	1	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16B_chr20_38800697_38928024	1/1	a0001	567	242	74	35	108	6	17	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	a0002	494	1	0	0	0	0	1	copy fasta	PPP1R16B	chr20	38800697	38928024