JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASB5_chr4_176208673_176274222	0/0	a0003	329	1	1	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	a0004	329	1	1	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	a0005	329	1	0	0	1	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	a0006	329	1	1	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	a0007	329	1	1	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB6_chr9_129629605_129647151	1/1	a0001	421	409	85	70	186	18	48	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	a0002	421	9	9	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	a0003	421	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	a0004	346	1	1	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	a0005	421	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	a0006	421	1	1	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB7_chr15_100597589_100656701	1/1	a0001	318	368	94	68	146	18	40	copy fasta	ASB7	chr15	100597589	100656701
ASB8_chr12_48142789_48162515	1/1	a0001	288	441	97	72	208	16	46	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	a0002	288	8	1	7	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	a0003	288	1	0	1	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB9_chrX_15238987_15275083	1/1	a0001	294	334	78	59	150	11	34	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	a0002	294	2	0	0	2	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASCC1_chr10_72091032_72221276	1/1	a0001	357	164	51	37	43	4	27	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	a0002	357	40	21	1	15	0	3	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	a0003	357	4	4	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	a0004	357	2	2	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	a0005	357	2	2	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	a0006	357	1	1	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	a0007	357	1	1	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	a0008	357	1	1	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	a0009	357	1	1	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC2_chr22_29783611_29843274	1/1	a0001	757	219	62	56	71	9	19	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0002	757	62	4	0	52	1	5	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0003	757	45	6	9	22	1	7	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0004	757	18	0	3	12	0	3	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0005	757	9	2	5	1	1	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0006	757	4	3	1	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0007	757	4	4	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0008	757	3	3	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0009	757	2	2	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0010	757	1	0	1	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0011	757	1	0	1	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0012	757	1	0	0	0	0	1	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0013	757	1	1	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0014	757	1	0	0	0	0	1	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	a0015	757	1	1	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC3_chr6_100503194_100886329	0/1	a0001	2202	175	46	27	78	7	16	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0002	2202	60	3	14	29	7	7	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0003	2202	41	12	9	13	0	7	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0004	2202	7	0	1	6	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0005	2202	6	5	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	1/0	a0006	2202	5	0	3	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0007	2202	3	3	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0008	2202	3	2	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0009	1269	1	0	0	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329