JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPP1R16B_chr20_38800697_38928024	0/0	a0003	567	1	0	1	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R17_chr7_31682215_31713455	1/1	a0001	155	335	74	66	146	10	37	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	a0002	155	97	19	8	62	4	4	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	a0003	155	9	4	0	2	0	3	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	a0004	155	1	1	0	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R18_chr6_30671389_30691645	0/1	a0001	613	401	76	72	192	13	47	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	a0002	613	5	0	4	0	1	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	a0003	613	5	0	4	0	1	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	a0004	613	4	4	0	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	a0005	613	2	0	0	2	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	a0006	613	2	2	0	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	a0007	613	1	0	0	1	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	a0008	613	1	0	0	0	0	1	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	a0009	613	1	0	0	1	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	a0010	613	1	0	0	1	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	a0011	613	1	0	0	0	1	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	a0012	613	1	0	0	1	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R1A_chr12_54574246_54593659	1/1	a0001	171	426	81	77	208	18	40	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	a0002	171	12	11	1	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	a0003	171	6	6	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1B_chr17_39621952_39641624	1/1	a0001	204	325	75	65	135	14	34	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	a0002	204	16	13	1	0	0	2	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	a0003	203	3	0	0	3	0	0	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	a0004	204	2	0	2	0	0	0	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1C_chr2_181980853_182122756	1/1	a0001	109	344	86	58	158	16	24	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R21_chr2_48435766_48520386	1/1	a0001	780	363	77	66	161	17	40	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	a0002	780	3	3	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	a0003	780	2	0	0	0	0	2	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	a0004	780	1	1	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	a0005	780	1	0	0	1	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	a0006	780	1	0	0	0	1	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	a0007	780	1	1	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R26_chr9_135474782_135493892	0/0	a0001	1209	121	38	30	30	11	12	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0002	1209	93	0	13	76	0	4	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0003	1209	75	9	14	32	2	18	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	1/1	a0004	1209	63	0	7	43	5	6	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0005	1209	20	11	1	7	0	1	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0006	1209	14	6	4	0	0	4	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0007	1209	8	7	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0008	1209	7	0	4	3	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0009	1209	7	7	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0010	1209	6	0	0	4	0	2	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0011	1209	5	0	0	5	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0012	1209	5	5	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0013	1209	5	1	4	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0014	1209	4	3	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0015	1209	3	3	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0016	1209	2	2	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0017	1209	2	0	0	2	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0018	1209	2	0	0	2	0	0	copy fasta	PPP1R26	chr9	135474782	135493892