JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPP1R26_chr9_135474782_135493892	0/0	a0019	1209	2	2	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0020	1209	2	1	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0021	1209	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0022	1209	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0023	1209	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0024	1209	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0025	1209	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0026	1209	1	0	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0027	1209	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0028	220	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0029	1209	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0030	1209	1	0	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0031	1032	1	0	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0032	1209	1	0	0	0	0	1	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0033	1209	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0034	1209	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0035	1209	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	a0036	1209	1	0	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R27_chr17_81828492_81840050	1/1	a0001	154	344	76	76	132	14	44	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	a0002	154	1	0	1	0	0	0	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	a0003	154	1	0	1	0	0	0	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R2B_chr5_156845295_156857528	1/1	a0001	205	420	95	73	194	17	39	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	a0002	205	4	1	2	0	1	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	a0003	205	1	1	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	a0004	205	1	0	0	1	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	a0005	205	1	1	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	a0006	205	1	0	0	0	0	1	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	a0007	205	1	0	1	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	a0008	205	1	0	0	1	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2C_chrX_42772366_42783163	1/1	a0001	202	323	70	53	162	9	27	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2C_chrX_42772366_42783163	0/0	a0002	202	4	3	1	0	0	0	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2C_chrX_42772366_42783163	0/0	a0003	202	4	0	0	4	0	0	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2C_chrX_42772366_42783163	0/0	a0004	202	1	1	0	0	0	0	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2C_chrX_42772366_42783163	0/0	a0005	64	1	0	0	1	0	0	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2_chr3_195509428_195548325	1/1	a0001	205	387	93	60	170	18	44	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	a0002	205	1	1	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R32_chr11_61476120_61495928	1/0	a0001	425	239	56	58	86	9	29	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	a0002	425	22	21	1	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	a0003	425	12	10	2	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	a0004	425	6	3	1	0	0	2	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/1	a0005	425	5	0	2	0	1	1	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	a0006	425	4	4	0	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	a0007	425	1	1	0	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	a0008	425	1	0	0	1	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	a0009	425	1	0	0	1	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	a0010	425	1	0	0	0	0	1	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	a0011	425	1	0	0	0	0	1	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	a0012	425	1	1	0	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R35_chr7_100430282_100441497	1/1	a0001	253	331	86	58	127	14	44	copy fasta	PPP1R35	chr7	100430282	100441497
PPP1R35_chr7_100430282_100441497	0/0	a0002	253	1	1	0	0	0	0	copy fasta	PPP1R35	chr7	100430282	100441497