JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPP1R35_chr7_100430282_100441497	0/0	a0003	253	1	1	0	0	0	0	copy fasta	PPP1R35	chr7	100430282	100441497
PPP1R35_chr7_100430282_100441497	0/0	a0004	253	1	0	0	1	0	0	copy fasta	PPP1R35	chr7	100430282	100441497
PPP1R36_chr14_64544961_64594381	0/0	a0001	422	158	50	32	52	5	19	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	1/1	a0002	422	127	21	31	59	7	7	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	a0003	422	26	6	3	5	0	12	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	a0004	422	5	4	1	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	a0005	422	4	2	2	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	a0006	422	2	2	0	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	a0007	422	2	0	0	2	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	a0008	422	1	1	0	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	a0009	422	1	0	1	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	a0010	422	1	0	0	1	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	a0011	422	1	0	0	1	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R37_chr19_45088179_45152285	1/1	a0001	691	306	89	62	110	11	32	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	a0002	691	14	1	8	0	1	4	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	a0003	691	8	6	2	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	a0004	691	6	0	4	2	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	a0005	691	1	0	0	1	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	a0006	691	1	0	0	0	0	1	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	a0007	691	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	a0008	691	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	a0009	691	1	0	0	1	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	a0010	691	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	a0011	691	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	a0012	691	1	0	0	0	0	1	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R3A_chr7_113871777_113924009	0/1	a0001	1122	148	31	42	51	7	16	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0002	1122	72	8	5	46	1	12	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0003	1122	22	0	2	20	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0004	1122	16	16	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0005	1122	9	9	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0006	1122	6	4	2	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0007	1122	3	3	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0008	1122	3	0	0	3	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	1/0	a0009	1122	2	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0010	1122	1	0	0	0	1	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0011	1122	1	0	1	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0012	1122	1	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0013	1122	1	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0014	1122	1	0	1	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0015	1122	1	0	0	0	0	1	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0016	954	1	0	0	0	1	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0017	1122	1	0	0	0	0	1	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0018	813	1	0	0	1	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0019	1122	1	0	0	1	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0020	1122	1	0	1	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0021	1122	1	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	a0022	1122	1	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3B_chr8_9131255_9155658	1/1	a0001	285	408	83	77	193	18	35	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	a0002	285	20	3	1	10	0	6	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	a0003	285	14	0	1	7	0	6	copy fasta	PPP1R3B	chr8	9131255	9155658