JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPP1R3B_chr8_9131255_9155658	0/0	a0004	285	1	0	0	0	0	1	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	a0005	285	1	0	1	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3C_chr10_91623442_91638071	1/1	a0001	317	353	91	78	132	18	32	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	a0002	317	2	2	0	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	a0003	317	2	2	0	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	a0004	317	1	0	0	1	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	a0005	317	1	1	0	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	a0006	317	1	0	0	1	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3D_chr20_59931663_59945305	1/1	a0001	299	376	85	63	168	16	42	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	a0002	299	2	0	0	2	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	a0003	299	1	0	1	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	a0004	299	1	0	1	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	a0005	299	1	0	1	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	a0006	299	1	1	0	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3E_chr14_23290652_23307859	1/1	a0001	279	409	96	71	188	18	34	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	a0002	279	14	0	0	14	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	a0003	279	4	0	0	4	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	a0004	279	1	0	1	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3F_chrX_49264793_49293090	1/1	a0001	799	235	41	40	114	11	27	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0002	799	33	29	4	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0003	799	8	0	8	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0004	22	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0005	22	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0006	268	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0007	799	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0008	536	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0009	799	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0010	799	1	1	0	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0011	546	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0012	799	1	1	0	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0013	800	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0014	799	1	1	0	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	a0015	799	1	0	0	0	0	1	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3G_chr6_5080341_5094487	0/1	a0001	358	298	36	59	152	13	37	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	1/0	a0002	358	69	26	15	20	3	4	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	a0003	358	31	29	2	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	a0004	358	5	4	1	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	a0005	358	3	0	0	3	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	a0006	358	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	a0007	358	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	a0008	358	1	0	1	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	a0009	358	1	0	0	0	0	1	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	a0010	358	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	a0011	358	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	a0012	358	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	a0013	358	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R42_chr8_66959103_67033554	1/1	a0001	271	130	61	20	27	6	14	copy fasta	PPP1R42	chr8	66959103	67033554
PPP1R42_chr8_66959103_67033554	0/0	a0002	271	1	0	0	1	0	0	copy fasta	PPP1R42	chr8	66959103	67033554
PPP1R42_chr8_66959103_67033554	0/0	a0003	271	1	1	0	0	0	0	copy fasta	PPP1R42	chr8	66959103	67033554
PPP1R7_chr2_241145467_241188652	1/1	a0001	360	394	92	77	166	12	45	copy fasta	PPP1R7	chr2	241145467	241188652