JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPP1R7_chr2_241145467_241188652	0/0	a0002	360	1	0	1	0	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	a0003	360	1	0	0	0	0	1	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R8_chr1_27825782_27856676	1/1	a0001	351	336	87	67	132	12	36	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	a0002	351	4	3	1	0	0	0	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R9A_chr7_94902594_95301400	0/0	a0001	1374	81	23	18	28	4	8	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	1/1	a0002	1374	72	14	13	28	4	11	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0003	1374	43	4	8	31	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0004	1374	26	14	3	6	0	3	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0005	1374	18	4	4	7	1	2	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0006	1374	15	7	1	4	0	3	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0007	1374	10	10	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0008	1374	6	0	0	6	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0009	1374	3	0	3	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0010	1374	3	3	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0011	1374	2	1	1	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0012	1374	2	0	0	2	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0013	1374	2	0	1	0	1	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0014	1374	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0015	1374	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0016	1374	1	0	0	1	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0017	1374	1	0	0	1	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0018	1374	1	0	0	0	0	1	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0019	1374	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	a0020	1374	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9B_chr17_50128737_50155677	1/1	a0001	817	384	93	78	150	14	47	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	a0002	817	2	2	0	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	a0003	817	1	1	0	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	a0004	817	1	0	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	a0005	817	1	0	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	a0006	817	1	0	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	a0007	817	1	0	0	0	0	1	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	a0008	817	1	0	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP2CA_chr5_134189332_134231073	1/1	a0001	309	364	86	60	166	12	38	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CB_chr8_30780616_30817818	1/1	a0001	309	303	90	54	111	10	36	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	a0002	309	1	0	0	1	0	0	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2R1A_chr19_52185052_52234518	1/1	a0001	589	383	90	76	151	16	48	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	a0002	589	1	0	0	1	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1B_chr11_111732877_111771389	1/1	a0001	601	354	90	76	140	10	36	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	a0002	601	1	0	1	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	a0003	601	1	0	1	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	a0004	601	1	0	0	0	0	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	a0005	601	1	0	0	0	0	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R2A_chr8_26286508_26377680	1/1	a0001	447	340	86	68	136	10	38	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2B_chr5_146575742_146883757	1/1	a0001	443	170	76	30	52	2	8	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2C_chr4_6315581_6477614	1/1	a0001	447	298	94	62	90	12	38	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2D_chr10_131896008_131964834	1/1	a0001	453	322	85	56	139	12	28	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	a0002	453	71	7	11	37	4	12	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	a0003	453	1	0	1	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R3A_chr3_135960728_136152894	1/0	a0001	1150	80	17	22	26	4	10	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/1	a0002	1150	75	38	14	8	4	10	copy fasta	PPP2R3A	chr3	135960728	136152894