JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPP2R3A_chr3_135960728_136152894	0/0	a0003	1150	28	5	9	1	1	12	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0004	1150	20	0	2	18	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0005	1150	7	6	1	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0006	1150	7	0	3	0	1	3	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0007	1118	4	4	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0008	1150	4	4	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0009	1150	3	3	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0010	1150	3	3	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0011	1150	2	2	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0012	1150	2	0	2	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0013	1150	1	0	0	0	0	1	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0014	1150	1	0	0	1	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	a0015	1150	1	0	1	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3B_chrX_328933_391907	0/1	a0001	575	10	2	0	2	1	4	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	a0002	575	8	0	3	4	0	1	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	a0003	575	1	1	0	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	a0004	575	1	1	0	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	a0005	383	1	0	1	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	a0006	449	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	a0007	537	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	a0008	537	1	1	0	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	a0009	575	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3C_chr14_35080472_35126990	1/1	a0001	453	376	93	75	156	12	38	copy fasta	PPP2R3C	chr14	35080472	35126990
PPP2R3C_chr14_35080472_35126990	0/0	a0002	453	1	1	0	0	0	0	copy fasta	PPP2R3C	chr14	35080472	35126990
PPP2R3C_chr14_35080472_35126990	0/0	a0003	453	1	0	1	0	0	0	copy fasta	PPP2R3C	chr14	35080472	35126990
PPP2R5A_chr1_212280410_212366853	1/1	a0001	486	381	86	64	178	13	38	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	a0002	486	2	0	1	0	1	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	a0003	486	1	0	1	0	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5B_chr11_64919689_64939475	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	1/1	a0001	497	426	90	76	198	16	44	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	a0002	497	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5C_chr14_101756709_101932977	1/1	a0001	579	99	39	19	24	4	11	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	a0002	579	37	15	6	15	0	1	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	a0003	579	1	0	1	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	a0004	579	1	0	0	1	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5D_chr6_42979570_43017342	1/1	a0001	602	306	92	64	108	10	30	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5E_chr14_63366364_63548377	1/1	a0001	467	252	88	36	110	2	14	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP3CA_chr4_101018418_101352526	1/1	a0001	521	191	72	33	60	4	20	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	a0002	139	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CB_chr10_73431433_73501024	1/1	a0001	524	202	68	30	84	0	18	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CC_chr8_22436078_22546125	1/1	a0001	512	316	83	48	135	12	36	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	a0002	512	4	4	0	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	a0003	512	3	3	0	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	a0004	512	1	0	1	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	a0005	512	1	0	1	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	a0006	512	1	0	0	1	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3R1_chr2_68173857_68257532	1/1	a0001	170	398	92	74	182	12	36	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R2_chr9_101586604_101599969	1/1	a0001	170	447	96	78	209	18	44	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	a0002	170	1	0	0	1	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP4C_chr16_30070994_30090376	1/1	a0001	307	367	90	69	160	8	38	copy fasta	PPP4C	chr16	30070994	30090376