JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPP4C_chr16_30070994_30090376	0/0	a0002	311	1	0	1	0	0	0	copy fasta	PPP4C	chr16	30070994	30090376
PPP4R1_chr18_9541794_9619559	1/1	a0001	950	261	70	51	108	10	20	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	a0002	950	108	14	19	59	4	12	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	a0003	950	8	3	5	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	a0004	950	4	4	0	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	a0005	950	2	1	1	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	a0006	950	2	0	0	0	2	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	a0007	950	1	1	0	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	a0008	950	1	0	0	1	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	a0009	950	1	1	0	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R2_chr3_72991811_73074198	1/1	a0001	417	351	92	48	159	8	42	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	a0002	417	2	0	0	2	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	a0003	417	2	2	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	a0004	413	2	0	0	2	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	a0005	417	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	a0006	417	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	a0007	417	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R3A_chr14_91452508_91515310	1/1	a0001	833	366	78	62	167	18	39	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	a0002	833	2	2	0	0	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	a0003	833	1	0	0	1	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	a0004	833	1	0	0	0	0	1	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3B_chr2_55542292_55622622	0/1	a0001	849	379	96	64	166	10	42	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	a0002	849	1	0	0	0	0	1	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	a0003	849	1	0	0	0	0	1	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	1/0	a0004	849	1	0	0	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3C_chrX_27455207_27468341	0/1	a0001	832	169	10	42	85	6	25	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	1/0	a0002	832	130	42	18	59	5	5	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	a0003	832	14	14	0	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	a0004	832	5	5	0	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	a0005	832	4	4	0	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	a0006	832	2	0	0	0	0	2	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	a0007	832	1	0	1	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R4_chr14_94169322_94284734	0/1	a0001	873	300	83	51	121	8	36	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	a0002	873	3	3	0	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	a0003	873	1	0	0	1	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	a0004	873	1	0	1	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	a0005	873	1	0	1	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	a0006	873	1	0	1	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP5C_chr19_46342087_46395975	1/1	a0001	499	392	91	72	168	18	41	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	a0002	499	1	1	0	0	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	a0003	499	1	0	0	0	0	1	copy fasta	PPP5C	chr19	46342087	46395975
PPP6C_chr9_125141573_125194803	1/1	a0001	305	393	87	66	192	14	32	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	a0002	305	1	1	0	0	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6R1_chr19_55224779_55264017	1/1	a0001	881	339	79	72	128	14	44	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0002	881	9	8	1	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0003	881	6	6	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0004	881	5	0	0	5	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0005	881	4	0	0	4	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0006	881	2	0	0	2	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0007	881	2	2	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017