JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPP6R1_chr19_55224779_55264017	0/0	a0008	881	2	0	0	2	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0009	881	1	0	0	1	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0010	881	1	0	0	0	0	1	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0011	881	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0012	881	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0013	881	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0014	881	1	0	1	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0015	881	1	0	0	0	0	1	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0016	881	1	0	0	1	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	a0017	881	1	0	0	1	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R2_chr22_50338327_50450090	1/0	a0001	959	244	63	38	107	14	21	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/1	a0002	959	50	8	14	13	2	12	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0003	959	11	1	0	10	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0004	959	7	5	1	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0005	959	4	4	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0006	959	4	0	3	0	1	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0007	959	3	0	2	0	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0008	959	3	0	0	3	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0009	959	3	3	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0010	959	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0011	959	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0012	959	1	0	1	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0013	959	1	0	1	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0014	959	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0015	959	1	0	0	0	1	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0016	959	1	0	0	0	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0017	959	1	0	0	0	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0018	959	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0019	959	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	a0020	959	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R3_chr11_68455752_68620334	1/1	a0001	873	233	76	43	90	10	12	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	a0002	873	15	15	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	a0003	873	2	0	0	2	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	a0004	873	1	1	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	a0005	873	1	0	1	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPRC1_chr10_102128040_102155333	1/1	a0001	1664	289	61	57	119	14	36	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0002	1664	54	1	5	41	0	7	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0003	1664	17	12	5	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0004	1664	5	5	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0005	1664	5	0	0	5	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0006	1664	2	2	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0007	1664	2	0	2	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0008	1664	2	0	2	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0009	1664	1	0	0	0	0	1	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0010	1664	1	0	1	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0011	1664	1	1	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0012	1664	1	0	0	1	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0013	1664	1	0	0	1	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0014	1664	1	1	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0015	1668	1	0	0	1	0	0	copy fasta	PPRC1	chr10	102128040	102155333