JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PPRC1_chr10_102128040_102155333	0/0	a0016	1664	1	1	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0017	1664	1	0	1	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0018	1664	1	0	1	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0019	1664	1	1	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	a0020	1664	1	1	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPT1_chr1_40067712_40102252	1/1	a0001	306	357	84	53	162	17	39	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	a0002	306	31	1	1	21	1	7	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	a0003	306	7	7	0	0	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	a0004	306	1	0	0	1	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT2_chr6_32149141_32168675	0/1	a0001	302	342	68	71	164	12	26	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	a0002	302	41	17	7	3	4	10	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	a0003	302	38	4	2	26	0	6	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	a0004	302	1	1	0	0	0	0	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	a0005	289	1	0	0	1	0	0	copy fasta	PPT2	chr6	32149141	32168675
PPTC7_chr12_110528245_110588318	1/0	a0001	304	315	83	59	124	13	35	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/1	a0002	303	13	5	5	0	1	1	copy fasta	PPTC7	chr12	110528245	110588318
PPWD1_chr5_65558296_65592549	1/1	a0001	646	382	98	74	153	18	37	copy fasta	PPWD1	chr5	65558296	65592549
PPWD1_chr5_65558296_65592549	0/0	a0002	646	1	0	0	0	0	1	copy fasta	PPWD1	chr5	65558296	65592549
PPWD1_chr5_65558296_65592549	0/0	a0003	646	1	0	0	1	0	0	copy fasta	PPWD1	chr5	65558296	65592549
PPY_chr17_43935804_43947476	1/1	a0001	95	359	78	71	156	16	36	copy fasta	PPY	chr17	43935804	43947476
PPY_chr17_43935804_43947476	0/0	a0002	95	18	17	1	0	0	0	copy fasta	PPY	chr17	43935804	43947476
PPY_chr17_43935804_43947476	0/0	a0003	95	1	1	0	0	0	0	copy fasta	PPY	chr17	43935804	43947476
PQBP1_chrX_48892930_48908143	1/1	a0001	265	302	77	58	125	13	27	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	a0002	123	1	0	0	1	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	a0003	225	1	0	0	0	0	1	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	a0004	121	1	0	0	1	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	a0005	78	1	0	0	1	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	a0006	123	1	0	0	1	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PRAC1_chr17_48716719_48727518	1/1	a0001	57	421	88	72	195	18	46	copy fasta	PRAC1	chr17	48716719	48727518
PRAC1_chr17_48716719_48727518	0/0	a0002	57	1	1	0	0	0	0	copy fasta	PRAC1	chr17	48716719	48727518
PRAC1_chr17_48716719_48727518	0/0	a0003	57	1	0	0	1	0	0	copy fasta	PRAC1	chr17	48716719	48727518
PRAC1_chr17_48716719_48727518	0/0	a0004	57	1	1	0	0	0	0	copy fasta	PRAC1	chr17	48716719	48727518
PRAC2_chr17_48718185_48729758	0/0	a0001	90	223	44	35	115	6	23	copy fasta	PRAC2	chr17	48718185	48729758
PRAC2_chr17_48718185_48729758	1/1	a0002	90	203	39	41	88	10	23	copy fasta	PRAC2	chr17	48718185	48729758
PRAC2_chr17_48718185_48729758	0/0	a0003	90	6	6	0	0	0	0	copy fasta	PRAC2	chr17	48718185	48729758
PRAC2_chr17_48718185_48729758	0/0	a0004	90	1	0	0	1	0	0	copy fasta	PRAC2	chr17	48718185	48729758
PRAC2_chr17_48718185_48729758	0/0	a0005	90	1	1	0	0	0	0	copy fasta	PRAC2	chr17	48718185	48729758
PRADC1_chr2_73223010_73238239	1/1	a0001	188	371	98	67	162	14	28	copy fasta	PRADC1	chr2	73223010	73238239
PRADC1_chr2_73223010_73238239	0/0	a0002	188	5	0	5	0	0	0	copy fasta	PRADC1	chr2	73223010	73238239
PRADC1_chr2_73223010_73238239	0/0	a0003	188	1	0	0	1	0	0	copy fasta	PRADC1	chr2	73223010	73238239
PRADC1_chr2_73223010_73238239	0/0	a0004	188	1	0	0	1	0	0	copy fasta	PRADC1	chr2	73223010	73238239
PRAF2_chrX_49066161_49079002	1/1	a0001	178	266	76	50	99	11	28	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	a0002	178	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	a0003	178	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	a0004	179	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	a0005	85	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAG1_chr8_8312736_8391439	0/0	a0001	1406	66	3	17	39	2	5	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0002	1402	59	9	17	19	4	10	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0003	1404	43	10	7	19	1	6	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0004	1404	43	11	3	21	3	5	copy fasta	PRAG1	chr8	8312736	8391439