JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAG1_chr8_8312736_8391439	0/0	a0005	1406	24	13	4	4	0	3	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/1	a0006	1404	18	2	11	0	2	2	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0007	1404	10	1	2	7	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	1/0	a0008	1406	7	5	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0009	1406	5	5	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0010	1404	4	4	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0011	1253	4	0	1	2	1	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0012	1406	4	4	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0013	1406	4	0	1	1	0	2	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0014	1404	3	0	0	3	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0015	1406	3	3	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0016	1404	2	0	0	0	1	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0017	1406	2	0	0	2	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0018	1406	2	0	0	0	0	2	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0019	1404	2	2	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0020	1404	2	0	2	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0021	1404	2	2	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0022	1404	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0023	1406	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0024	1253	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0025	1404	1	0	1	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0026	1404	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0027	1402	1	0	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0028	1404	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0029	1251	1	0	0	0	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0030	1406	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0031	1406	1	0	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0032	1404	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0033	1406	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0034	1406	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0035	1251	1	0	1	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0036	1253	1	0	1	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0037	1406	1	0	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0038	1404	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0039	1406	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0040	1404	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0041	1253	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0042	1253	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0043	1251	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0044	1404	1	0	0	0	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0045	1406	1	0	0	0	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0046	1406	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0047	1406	1	0	0	0	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	a0048	1402	1	0	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAM1_chr19_8485056_8507640	1/1	a0001	670	226	15	51	119	8	31	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0002	710	23	1	7	8	2	5	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0003	674	18	0	0	18	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0004	718	12	0	6	0	0	6	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0005	710	10	10	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0006	662	9	0	3	4	1	1	copy fasta	PRAM1	chr19	8485056	8507640