JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASCC3_chr6_100503194_100886329	0/0	a0010	2202	1	0	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0011	2202	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0012	2202	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0013	2202	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0014	2202	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0015	2202	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0016	2202	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0017	2202	1	0	0	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0018	2202	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0019	2202	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0020	2202	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0021	2202	1	0	0	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	a0022	2202	1	0	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCL1_chr12_102952674_102965513	1/1	a0001	236	219	42	43	98	9	25	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0002	237	62	29	16	7	5	5	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0003	239	40	6	3	29	0	2	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0004	235	9	5	2	2	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0005	238	7	4	1	0	0	2	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0006	240	5	2	3	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0007	233	4	0	1	0	0	3	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0008	241	2	2	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0009	225	1	0	0	0	0	1	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0010	236	1	1	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0011	232	1	0	0	0	0	1	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0012	236	1	0	0	0	0	1	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0013	242	1	1	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	a0014	237	1	0	1	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL2_chr11_2263498_2275588	1/1	a0001	193	416	95	79	181	13	46	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	a0002	193	1	0	1	0	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	a0003	193	1	0	0	1	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	a0004	193	1	1	0	0	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	a0005	193	1	0	0	0	1	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL3_chr11_8932578_8948016	0/1	a0001	181	271	36	40	157	9	28	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	1/0	a0002	181	158	54	31	47	6	19	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	a0003	181	6	6	0	0	0	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	a0004	181	1	0	0	0	1	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	a0005	181	1	0	0	1	0	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	a0006	181	1	0	0	1	0	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	a0007	181	1	0	0	0	0	1	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	a0008	127	1	0	1	0	0	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL4_chr12_107769704_107781644	1/1	a0001	172	451	86	77	218	18	50	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	a0002	172	9	8	1	0	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	a0003	172	2	2	0	0	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL5_chr1_201108943_201132184	1/1	a0001	206	320	76	60	138	12	32	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	a0002	206	52	3	12	31	2	4	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	a0003	206	28	0	5	18	0	5	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	a0004	206	15	14	1	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	a0005	206	1	0	0	1	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	a0006	206	1	0	0	0	0	1	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	a0007	206	1	1	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184