JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAM1_chr19_8485056_8507640	0/0	a0057	650	1	0	1	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0058	806	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0059	770	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0060	746	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0061	734	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0062	710	1	0	1	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0063	709	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0064	698	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0065	698	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0066	698	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0067	686	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0068	662	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0069	60	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0070	734	1	0	0	0	1	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0071	709	1	0	0	0	0	1	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0072	686	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	a0073	662	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAMEF10_chr1_12887896_12903270	0/0	a0001	474	122	3	15	87	4	13	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	1/0	a0002	474	52	2	14	25	2	8	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0003	474	26	6	2	15	1	2	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0004	474	15	0	5	5	0	5	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0005	474	13	0	7	6	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0006	474	11	1	3	3	1	3	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0007	474	11	0	4	6	1	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0008	474	6	5	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0009	474	6	6	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0010	474	5	0	0	5	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0011	474	5	0	0	5	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0012	474	4	0	0	2	0	2	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0013	474	4	0	0	2	1	1	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0014	474	4	0	0	4	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0015	474	4	2	0	0	2	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0016	474	3	0	3	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0017	474	3	0	0	3	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0018	474	3	0	3	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0019	474	3	3	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0020	474	3	2	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0021	474	3	1	0	0	0	2	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0022	474	3	2	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0023	474	3	3	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0024	474	3	3	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0025	474	2	0	0	0	0	2	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0026	474	2	2	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0027	474	2	0	1	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0028	474	2	0	1	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0029	474	2	0	2	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0030	474	2	0	0	1	0	1	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0031	474	2	1	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0032	474	2	2	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0033	474	2	0	0	0	1	1	copy fasta	PRAMEF10	chr1	12887896	12903270