JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAMEF10_chr1_12887896_12903270	0/0	a0034	474	2	0	0	1	0	1	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0035	474	2	2	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0036	474	2	2	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0037	474	2	2	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0038	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0039	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0040	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0041	474	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0042	474	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0043	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0044	474	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0045	523	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0046	522	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0047	474	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0048	514	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0049	522	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0050	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0051	522	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0052	474	1	0	0	0	0	1	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0053	252	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0054	474	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0055	474	1	0	0	0	1	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0056	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0057	474	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0058	474	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0059	474	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0060	474	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0061	474	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0062	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0063	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0064	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0065	474	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0066	474	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0067	474	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0068	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0069	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0070	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0071	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0072	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	a0073	474	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF11_chr1_12819605_12836410	0/1	a0001	478	308	34	50	173	12	38	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0002	478	51	31	15	0	2	3	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0003	478	8	7	1	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0004	478	3	0	0	0	0	3	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0005	478	3	2	1	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0006	478	3	0	2	0	1	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0007	478	3	3	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0008	478	2	0	0	2	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0009	478	2	0	1	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0010	478	2	0	0	2	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410