JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAMEF11_chr1_12819605_12836410	0/0	a0011	478	2	2	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0012	478	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0013	478	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	1/0	a0014	478	1	0	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0015	478	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0016	478	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0017	478	1	0	0	0	0	1	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0018	478	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0019	478	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0020	478	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0021	478	1	0	0	0	0	1	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0022	478	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0023	478	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0024	478	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0025	478	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0026	478	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0027	478	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	a0028	478	1	0	0	0	1	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF12_chr1_12768738_12782906	1/0	a0001	483	287	53	64	125	9	35	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/1	a0002	483	105	36	14	40	3	11	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	a0003	483	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	a0004	483	1	0	0	0	0	1	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	a0005	455	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	a0006	483	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	a0007	483	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	a0008	483	1	0	0	0	0	1	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	a0009	483	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	a0010	483	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	a0011	483	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	a0012	483	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF13_chr1_13191188_13206409	0/0	a0001	474	21	13	1	3	0	4	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	1/0	a0002	474	12	2	2	3	2	2	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	a0003	104	4	2	0	0	0	2	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	a0004	474	3	0	1	0	0	2	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	a0005	104	3	1	0	1	0	1	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	a0006	77	2	1	0	0	0	1	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	a0007	474	2	2	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	a0008	474	2	2	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	a0009	447	1	1	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	a0010	474	1	1	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	a0011	474	1	0	0	1	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	a0012	104	1	1	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF14_chr1_13336892_13352134	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	1/1	a0001	474	220	53	58	69	12	26	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	a0002	474	23	13	1	9	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	a0003	474	4	4	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	a0004	474	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	a0005	474	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	a0006	474	1	0	0	0	0	1	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	a0007	474	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134